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Allam, Bassem

Rosa, M.E., J.E. Ward, S.E. Shumway, G.H. Wikfors, B.A. Holohan, E. Pales-Espinosa and B. Allam. 2011. The role of particle surface properties on feeding selectivity by Eastern oysters, Crassostrea virginica, and blue mussels, Mytilus edulis. Journal of Shellfish Research 30(2): 549-549.

Wang, K., M. Perrigault and B. Allam. 2011. Effects of temperature and QPX (Quahog Parasite Unknown) infection on the transcription of defense-related genes in the hard clam, Mercenaria mercenaria. Journal of Shellfish Research30(2): 560-561.

Rubin, E., A. Tanguy, M. Perrigault and B. Allam. 2011. Virulence-related genes in QPX, the thraustochytrid parasite of the hard clam, Mercenaria mecenaria. Journal of Shellfish Research 30(2): 550-550.

Espinosa, E.P., X. Jing, M Perrigault and B. Allam. 2011. Mucosal C-type lectins in Crassostrea virginica and Mytilus edulis: potential involvement in particle capture and mucosal immunity. Journal of Shellfish Research 30(2): 503-503.

Dahl, S.F., M. Perrigault, Q.Liu, J.L. Collier, D.A. Barnes and B. Allam. 2011. Effects of temperature on hard clam (Mercenaria mercenaria) immunity and QPX (quahog parasite unknown) disease development: I. dynamics of QPX disease. Journal of Invertebrate Pathology 106 (2): 314-321.

Perrigault, M., S.F. Dahl, E. Pales Espinosa, L. Gambino and B Allam. 2011. Effects of temperature on hard clam (Mercenaria mercenaria) immunity and QPX (quahog parasite unknown) disease development: II. defense parameters. Journal of Invertebrate Pathology 106 (2): 322-332.

Jing, X., E. Pales Espinosa, M. Perrigault and B. Allam. 2011. Identification, molecular characterization and expression analysis of a mucosal C-type lectin in the eastern oyster, Crassostrea virginica. Fish and Shellfish Immunology 30 (3): 851-858.

Levinton, J., M. Doall, D. Ralston, A. Starke and B. Allam. 2011. Climate change, precipitation and the loss of an estuarine refuge. PLoS One. Published 28 Apr 2011 10.1371/journal.pone.0018849.

Aller, Josephine

Alpert, P. A., J.Y. Aller and D.A. Knopf. 2011. Initiation of the ice phase by marine biogenic surfaces in supersaturated gas and supercooled aqueous phases. Physical Chemistry Chemical Physics 13(44): 19882-19894.

Knopf, D. A., P. A. Alpert, B. Wang and J. Y. Aller. 2011. Stimulation of ice nucleation by marine diatoms. Nature Geoscience 4:88–90 doi:10.1038/ngeo1037

Alpert, P.A., J.Y. Aller and D.A. Knopf. 2011. Ice nucleation from aqueous NaCl droplets with and without marine diatoms. Atmospheric Chemistry and Physics 11(12): 5539-5555.

Aller, Robert

Soto-Neira, Q. Zhu and R.C. Aller. 2011. A new spectrophotometric method to quantify dissolved manganese in marine pore waters. Marine Chemistry 127 (1-4): 56-63.

Wang, D., R. C. Aller and S. Sanudo-Wilhelmy, 2011. Redox speciation and early diagenetic behavior of dissolved molybdenum in sulfidic muds. Marine Chemistry 125(1-4): 101-107.

Cao, Z.R., Q.Z. Zhu, R.C. Aller and J.Y. Aller. 2011. A fluorosensor for two-dimensional measurements of extracellular enzyme activity in marine sediments. Marine Chemistry 123(1-4): 23-31.

Fan, Y., Q. Zhu, R. C. Aller and D.C. Rhoads. 2011. An in situ multispectral imaging system for planar optodes in sediments: example high resolution seasonal patterns of pH. Aquatic Geochemistry 17(4-5): 457-471.

Zhu, Q., R. C. Aller and A. Kaushik. 2011. Analysis of vitamin B12 in seawater and marine sediment pore water using ELISA. Limnology and Oceanography: Methods 9: 515- 523.

Ammerman, James

Quigg, A., J.B. Sylvan, A.B. Gustafson, T. R. Fisher, R.L. Oliver, S.Tozzi and J.W. Ammerman. 2011. Going west: nutrient limitation of primary production in the northern Gulf of Mexico and the importance of the Atchafalaya River.Aquatic Geochemistry 17(4-5): 519-544. DOI: 10.1007/s10498-011-9134-3

Armstrong, Robert

Saba V.S., M. A. M. Friedrichs, D. Antoine, R.A. Armstrong, I. Asanuma, M.J. Behrenfeld, A.M. Ciotti, M. Dowell, N. Hoepffner, K.J.W. Hyde, J. Ishizaka, T. Kameda, J. Marra, F. Melin, A. Morel, J. O’Reilly, M. Scardi, W.O. Smith, Jr., T.J. Smyth, S. Tang, J. Uitz, K. Waters and T.K. Westberry. 2011. An evaluation of ocean color model estimates of marine primary productivity in coastal and pelagic regions across the globe. 2011. Biogeosciences 8(2): 489-503.

Xue, J., C. Lee, S. Wakeham and R.A. Armstrong. 2011. Using principal components analysis (PCA) with cluster analysis to study the organic geochemistry of sinking particles in the ocean. Organic Geochemistry 42(4): 356-367.

Collier J.L., R. Lovindeer, Y. Xi, J.C. Radway and R. A. Armstrong. 2011. Differences in growth and physiology of marine Synechococcus (Cyanobacteria) on nitrate versus ammonium are not determined solely by nitrogen source redox state. Journal of Phycology. (in press)

Baumann, Hannes

Baumann, H. and M. Gagliano. 2011. Changing otolith/fish size ratios during settlement in two tropical damselfishes .Helgoland Marine Research 65(3): 425-429 DOI: 10.1007/s10152-011-0255-2

Baumann, H. and D.O. Conover. 2011. Adaptation to climate change: contrasting patterns of thermal-reaction-norm evolution in Pacific versus Atlantic silversides . Proceedings of the Royal Society B-Biological Sciences 278(1716): 2265-2273. DOI: 10.1098/rspb.2010.2479

Black, David

Black, D., R. Thunell, K. Wejnert and Y. Astor. 2011. Carbon isotope composition of Caribbean Sea surface waters: Response to the uptake of anthropogenic CO(2) . Geophysical Research Letters 38, L16609 DOI: 10.1029/2011GL048538

Neukom, R., J. Luterbacher, R. Villalba, M. Küttel, D. Frank, P. D. Jones, M. Grosjean, H. Wanner, J.-C. Aravena, D. E. Black, D. A. Christie, R. D’Arrigo, A. Lara, M. Morales, C. Soliz-Gamboa, A. Srur, R. Urrutia and L. von Gunten,. 2011. Multiproxy summer and winter surface air temperature field reconstructions for southern South America covering the past centuries . Climate Dynamics 37(1-2): 35-51. DOI: 10.1007/s00382-010-0793-3

Bokuniewicz, Henry

Buonaiuto, F.S., M. Slattery and H.J. Bokuniewicz. 2011. Wave modeling of Long Island coastal waters. Journal of Coastal Research 27(3): 470-477.

Bokuniewicz, H.J., N.C. Kraus, S. Munger, M. Slattery and R. Coffey. 2011. Monitoring incipient breaching at an artificial inlet: Georgica Pond, New York. Journal of Coastal Research: Special Issue 59 – Proceedings, Symposium to Honor Dr. Nicholas Kraus [Roberts, Rosati & Wang], pp. 111 – 117. doi: 10.2112/SI59-011.1

Rapaglia, J., L. Zaggia, K. Ricklefs, M. Gelinas and H.J. Bokuniewicz. 2011. Characteristics of ships’ depression waves and associated sediment resuspension in Venice Lagoon, Italy. Journal of Marine Systems 85(1-2): 45-56.

Bowman, Malcolm

Rosensweig, C., W. D. Solecki, R. Blake, M. Bowman, C. Faris, V. Gornitz, R. Horton, K. Jacob, A. LeBlanc, R. Leichenko, M. Linkin, D. Major, M.O’Grady, L. Patrick, E. Sussman, G. Yohe and R Zimmerman. 2011. Developing coastal adaptation to climate change in the New York City infrastructure-shed: process, approach, tools, and strategies. Climatic Change (Special Issue SI) 106(1): 93-127.

Brownawell, Bruce

Lara-Martin, P. A., E. Gonzalez-Mazo and B.J. Brownawell. 2011. Multi-residue method for the analysis of synthetic surfactants and their degradation metabolites in aquatic systems by liquid chromatography-time-of-flight-mass spectrometry. Journal of Chromatography A 1218(30): 4799-4807.

Li, X. and B.J. Brownawell. 2011. Quaternary ammonium compounds in urban estuarine sediment environments – a class of contaminants in need of increased attention? Environmental Science & Technology 44(19): 7561-7568. DOI: 10.1021/es1011669

Cerrato, Robert

Nuttall, M. A., A. Jordaan, R.M. Cerrato and M.G. Frisk. 2011. Identifying 120 years of decline in ecosystem structure and maturity of Great South Bay, New York using the Ecopath modelling approach. Ecological Modelling 222(18): 3335-3345. DOI: 10.1016/j.ecolmodel.2011.07.004

Sagarese, S.R., R.M. Cerrato and M.G. Frisk. 2011. Diet Composition and Feeding Habits of Common Fishes in Long Island Bays, New York. Northeastern Naturalist 18(3): 292 – 314.

Chang, Edmund K.M.

Chang, E.K. M. and Y. Guo. 2011. Comments on “The source of the midwinter suppression in storminess over the North Pacific”. Journal of Climate 24(19): 5187-5191. DOI: 10.1175/2011JCLI3987.1

Chang, E. K. M. and W. Lin. 2011: Comments on “The role of the Central Asian Mountains on the midwinter suppression of North Pacific Storminess”. Journal of Atmospheric Sciences 68(11): 2800–2803. doi: http://dx.doi.org/10.1175/JAS-D-11-021.1

Chapman, Demian

Fitzpatrick, S., M.S. Shivji, D.D. Chapman and P.A. Prodöhl. 2011. Development and characterization of 10 polymorphic microsatellite loci for the blue shark, Prionace glauca, and their cross shark-species amplification. Conservation Genetics Resources 3(3): 523-527. DOI: 10.1007/s12686-011-9395-6

Doukakis, P., B. Hanner, M. Shivji, C. Bartholomex, D.D. Chapman, E. Wong and G. Amato. 2011. Applying genetic techniques to study remote shark fisheries in northeastern Madagascar. Mitochondrial DNA. DOI: 10.3109/19401736.2010.526112

Chapman, D.D., C. A. Simpfendorfer, T. R. Wiley, G. R. Poulakis, C. Curtis, M. Tringali, J.K. Carlson and K. A. Feldheim. 2011. Genetic diversity despite population collapse in a critically endangered marine fish: the smalltooth sawfish (Pristis pectinata). Journal of Heredity 102(6): 643-652.

Benavides, M.T., K.A. Feldheim, C.A. Duffy, S. Wintner, M. Braccini, J. Boomer, C. Huveneers, P. Rogers, J.C. Mangel, J. Alfaro-Shigueto, D.P. Cartamil and D.D. Chapman. 2011. Phylogeography of the copper shark (Carcharhinus brachyurus) in the Southern Hemisphere: implications for the conservation of a coastal apex predator. Marine and Freshwater Research 62(7): 861-869. DOI: 10.1071/MF10236

Cochran, J. Kirk

Camara-Mor, P., P. Masque, J Garcia-Orellana, S. Kern, J.K. Cochran and C. Hanfland. 2011. Interception of atmospheric fluxes by Arctic sea ice: evidence from cosmogenic (7)Be. Journal of Geophysical Research-Oceans116,C12041. DOI: 10.1029/2010JC006847

Kellogg, C.T. E.; S.D. Carpenter, A.A. Renfro , A. Sallon, C. Michel, J. K. Cochran and J. W. Deming. 2011. Evidence for microbial attenuation of particle flux in the Amundsen Gulf and Beaufort Sea: elevated hydrolytic enzyme activity on sinking aggregates . Polar Biology 34(12): 2007-2023 DOI: 10.1007/s00300-011-1015-0

Colle, Brian

Di Liberto, T., B.A. Colle, G. Nickitas, A. F. Blumberg and A. A. Taylor. 2011. Verification of a multimodel storm surge ensemble around New York City and Long Island for the cool season. Weather and Forecasting 26(6): 922-939 DOI: 10.1175/WAF-D-10-05055.1

Murray, J.C. and B.A. Colle. 2011. The spatial and temporal variability of convective storms over the northeast United States during the warm season. Monthly Weather Review 139(3): 992-1012.

Lin, Y.L. and B.A. Colle. 2011. A new bulk microphysical scheme that includes riming intensity and temperature-dependent ice characteristics. Monthly Weather Review 139(3): 1013-1035.

Lin, Y.L., L.I. Donner and B.A. Colle. 2011. Parameterization of riming intensity and its impact on ice fall speed using ARM data. Monthly Weather Review 139(3): 1036-1047.

Lin, Y.L. and B.A. Colle. 2011. A new bulk microphysical scheme that includes riming intensity and temperature-dependent ice characteristics. Monthly Weather Review 139(3): 1013-1035.

Colle, B.A. and M.E. Charles. 2011. Spatial distribution and evolution of extra-tropical cyclone errors over North America and its adjacent oceans in the NCEP Global Forecast System Model. Weather and Forecasting. 26(2): 129-149.

Yuter, S.E., D.A. Stark, J.A. Crouch, M.J. Payne and B. A. Colle. 2011. The impact of varying environmental conditions on the spatial and temporal patterns of orographic precipitation over the Pacific Northwest near Portland, Oregon.Hydrometeorology 12(3): 329-351.

Lombardo, K. and B. A. Colle. 2011. Convective storm structures and ambient conditions associated with severe weather over the Northeast U.S. Weather Forecasting 26(6): 940-956 DOI: 10.1175/WAF-D-11-00002.1

Collier, Jackie

Collier, J.L., J.C. Radway, Y Liu and N. Liu. 2011. Cultivated and cultivation-independent diversity of fungus-like marine protists, the Labyrinthulomycetes. Journal of Phycology 47 (Special Issue, Supplement 2): S46-S47.

Dahl, S.F., M. Perrigault, Q.Liu, J.L. Collier, D.A. Barnes and B. Allam. 2011. Effects of temperature on hard clam (Mercenaria mercenaria) immunity and QPX (quahog parasite unknown) disease development: I. dynamics of QPX disease. Journal of Invertebrate Pathology 106 (2): 314-321.

Gobler, C.J., D.L. Berry, S.T. Dyhrman, S.W. Wilhelm, A. Salamov, A.V. Lobanov, Y. Zhang, J.L. Collier, L.L. Wurch, A.B. Kustka, B.D. Dill, M. Shah, N.C. VerBerkmoes, A. Kuo, A. Terry, J. Pangilinan, E.A. Lindquist, S. Lucas, I.T. Paulsen, T.K. Hattenrath-Lehmann*, S.C. Talmage*, E.A. Walker*, F. Koch*, A.M. Burson*, M.A. Marcoval, Y.Z. Tang, G.R. LeCleir, K.J. Coyne, G.M. Berg, E.M. Bertrand, M.A. Saito, V.N. Gladyshev, I.V. Grigoriev. 2011. Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics. Proceedings of the National Academy of Sciences108(11): 4352-4357. (doi: 10.1073/pnas.1016106108)

Conover, David

Baumann, H. and D.O. Conover. 2011. Adaptation to climate change: contrasting patterns of thermal-reaction-norm evolution in Pacific versus Atlantic silversides . Proceedings of the Royal Society B-Biological Sciences 278(1716): 2265-2273. DOI: 10.1098/rspb.2010.2479

Mach, M.E., E.J. Sbrocco, L.A. Hice, T.A.Duffy, D.O. Conover and P.H. Barber. 2011. Regional differentiation and post-glacial expansion of the Atlantic silverside, Menidia menidia, an annual fish with high dispersal potential. Marine Biology 158(3): 515-530.

Clarke, L.M., S.R. Thorrold and D.O. Conover. 2011. Population differences in otolith chemistry have a genetic basis in Menidia menidia. Canadian Journal of Fisheries and Aquatic Sciences. 68(1): 105-114. 2011
Pugh, G. and D.O. Conover. 2011. NSF: Advancing Basic Ocean Research and Infrastructure. Sea Technology. 52(1):

Fisher, Nicholas

Dutton, J. and N.S. Fisher. 2011. Salinity effects on the bioavailability of aqueous metals for the estuarine killifishFundulus heteroclitus. Environmental Toxicology and Chemistry 30(9): 2107-2114. DOI: 10.1002/etc.600

Dutton, J. and N.S. Fisher. 2011. The bioaccumulation of As, Cd, Cr, Hg, and MeHg in the killifish (Fundulus heteroclitus) from worm and amphipod prey. Science of the Total Environment 409(18): 3438-3447.

Baumann, Z. and N.S. Fisher. 2011. Modeling metal bioaccumulation in a deposit-feeding polychaete from labile sediment fractions and from pore water. Science of the Total Environment 409(13): 2607-2615.

Baumann, Z. and N.S. Fisher. 2011. Modeling metal bioaccumulation in a deposit-feeding polychaete from labile sediment fractions and from pore water. Science of the Total Environment 409(13): 2607-2615.

Baumann, Z. and N.S. Fisher. 2011. Relating the sediment phase speciation of As, Cd and Cr with their bioavailability for the deposit-feeding polychaete Nereis succinea. Environmental Toxicology and Chemistry 30(3): 747-756.

Peng, X., S. Palma, N.S. Fisher and S.S. Wong. 2011. Effect of morphology of ZnO nanostructures on their toxicity to marine algae. Aquatic Toxicology 102(3-4): 186-196.

Chen, X., S.B. Baines and N.S. Fisher. 2011. Can copepods be limited by the iron content of their food? Limnology and Oceanography 56(2): 451-460.

Chen, X., S.G. Wakeham and N.S. Fisher. 2011. Influence of iron on fatty acid and sterol composition of marine phytoplankton and copepod consumers. Limnology and Oceanography 56(2): 716-724.

Baines, S.B., B.S. Twining, S. Vogt, W.M. Balch, N.S. Fisher and D.M. Nelson. 2011. Elemental composition of equatorial Pacific diatoms exposed to additions of silicic acid and iron. Deep-Sea Research II 58(3-4): 512-523.

Fisher, N.S. and C.Y. Chen. 2011. Interdisciplinary approaches for addressing marine contamination issues.Environmental Conservation 38(2): 187-198.

Flagg, Charles

Rossby, T., C. Flagg, P. Ortner and C.Hu. 2011. A tale of two eddies: diagnosing coherent eddies through acoustic remote sensing. Journal of Geophysical Research-Oceans 116, C12017 DOI: 10.1029/2011JC007307

Wang, D-P., C.N.Flagg, K. Donohue and H.T. Rossby. 2011. Wavenumber spectrum in the Gulf Stream from shipboard ADCP observations and comparison with altimetry measurements. Journal of Physical Oceanography 40(4): 840-844 DOI: 10.1175/2009JPO4330.1

Frisk, Michael

Nuttall, M. A., A. Jordaan, R.M. Cerrato and M.G. Frisk. 2011. Identifying 120 years of decline in ecosystem structure and maturity of Great South Bay, New York using the Ecopath modelling approach. Ecological Modelling 222(18): 3335-3345. DOI: 10.1016/j.ecolmodel.2011.07.004

Frisk, M.G., T.J. Miller, R.J. Latour and S. J. D. Martell. 2011. Assessing biomass gains from marsh restoration in Delaware Bay using Ecopath with Ecosim. Ecological Modelling 222(1):190-200.

Frisk, M.G., D.E. Duplisea and V.M. Trenkel. 2011. Exploring the occupancy-abundance relationships for the Georges Bank finfish and shellfish community from 1963-2006. Ecological Applications 21(1): 227-240.

Hall, C.J., A. Jordaan, and M.G. Frisk. 2011. The historic influence of dams on diadromous fish habitat with a focus on river herring and hydrologic connectivity. Landscape Ecology 26(1):95-107.

Sagarese, S.R., R.M. Cerrato and M.G. Frisk. 2011. Diet Composition and Feeding Habits of Common Fishes in Long Island Bays, New York. Northeastern Naturalist 18(3): 292 – 314.

Sagarese, S.R. and M.G. Frisk. 2011. Movement Patterns and Residence of Adult Winter Flounder within a Long Island Estuary. Marine and Coastal Fisheries 3(1): 295-306.

Geller, Marvin

Geller, M.A., T.H. Zhou, R. Ruedy, I. Aleinov, L. Nazarenko, N.L. Tausnev, S. Sun, M. Kelley and Y. Cheng. 2011. New gravity wave treatments for GISS climate models. Journal of Climate 24(15): 3989-4002. DOI: 10.1175/2011JCLI4013.1

Gobler, Christopher

Hattenrath-Lehmann, T.K. and C.J. Gobler. 2011. Allelopathic inhibition of competing phytoplankton by North American strains of the toxic dinoflagellate, Alexandrium fundyense: evidence from field experiments, laboratory experiments, and bloom events . Harmful Algae 11: 106-116 DOI: 10.1016/j.hal.2011.08.005

Talmage, S.C. and C.J. Gobler. 2011. Effects of elevated temperature and carbon dioxide on the growth and survival of larvae and juveniles of three species of northwest Atlantic bivalves. PLoS One 6(10) Article: e26941 DOI: 10.1371/journal.pone.0026941

Tang, Y.Z. and C.J. Gobler. 2011. The green macroalga, Ulva lactuca, inhibits the growth of seven common harmful algal bloom species via allelopathy. Harmful Algae 10(5): 480-488 DOI: 10.1016/j.hal.2011.03.003

Harke, M.J., C.J. Gobler and S.E. Shumway. 2011. Suspension feeding by the Atlantic slipper limpet (Crepidula fornicata) and the northern quahog (Mercenaria mercenaria) in the presence of cultured and wild populations of the harmful brown tide alga, Aureococcus anophagefferens. Harmful Algae 10(5): 503–511.

Koch, F., M.A. Marcoval, C. Panzeca, K.W. Bruland, S.A. Sañudo-Wilhelmy and C. J. Gobler. 2011. The effect of vitamin B-12 on phytoplankton growth and community structure in the Gulf of Alaska. Limnology and Oceanography 56(3): 1023-1034.

Jiang, X., D.J. Lonsdale and C.J. Gobler. 2011. Rapid gain and loss of evolutionary resistance to the harmful dinoflagellate Cochlodinium polykrikoides in the copepod Acartia tonsa. Limnology and Oceanography 56(3): 947-954.

Gobler C.J., D.L. Berry, S.T. Dyhrman ST, S.W. Wilhelm et al. 2011. Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics. Proceedings of the National Academy of Sciences of the United Stated of America 108(11): 4352-4357.

Davis, T.W. and C.J. Gobler. 2011. Grazing by mesozooplankton and microzooplankton on toxic and non-toxic strains of Microcystis in the Transquaking River, a tributary of Chesapeake Bay. Journal of Plankton Research 33(3): 415-430. doi: 10.1093/plankt/fbq109

Wurch, L.L., S.T. Haley, E.D. Orchard, C.J. Gobler and S.T. Dyhrman. 2011. Nutrient-regulated transcriptional responses in the brown tide-forming alga Aureococcus anophagefferens . Environmental Microbiology 13(2): 468-481. doi:10.1111/j.1462-2920.2010.02351.x

Harke, M.J., D.L. Berry, J.W. Ammerman and C.J. Gobler. 2011. Molecular response of the bloom-forming Cyanobacterium, Microcystis aeruginosa, to phosphorus limitation. Microbial Ecology, DOI 10.1007/s00248-011-9894-8

Tang, Y.Z. and C.J. Gobler. 2011. Allelopathic effects of the green macroalgae, Ulva lactuca, on seven common harmful algal bloom species. Harmful Algae 10(5): 480–488.

Friedland, K.D., P.D. Lynch and C.J. Gobler. 2011. Time series mesoscale response of Atlantic menhaden Brevoortia tyrannus to variation in plankton abundances. Journal of Coastal Research, doi: 10.2112/JCOASTRES-D-10-00171.1

Wall, C.C., B.J. Peterson and C.J. Gobler. 2011. The growth of estuarine resources (Zostera marina, Mercenaria mercenaria, Crassostrea virginica, Argopecten irradians, Cyprinodon variegatus) in response to nutrient loading and enhanced suspension feeding by adult shellfish. Estuaries and Coasts DOI: 10.1007/s12237-011-9377-7

Khairoutdinov, Marat

Goswami, B.B., N.J. Mani, P. Mukhopadhyay, D.E. Waliser, J.J. Benedict, E.D. Maloney, M. Khairoutdinov and B.N. Goswami. 2011. Monsoon intraseasonal oscillations as simulated by the superparameterized Community Atmosphere Model. Journal of Geophysical Research-Atmospheres 116, D22104 DOI: 10.1029/2011JD015948

DeMott, C. A., C. Stan, D. A. Randall, J. L. Kinter III and M. Khairoutdinov. 2011: The Asian monsoon in the super-parameterized CCSM and its relation to tropical wave activity. Journal of Climate 24(19): 5134-5156. DOI: 10.1175/2011JCLI4202.1

Yamaguchi, T., D. A. Randall and M. F. Khairoutdinov. 2011. Cloud modeling tests of the ULTIMATE-MACHO scalar advection scheme. Monthly Weather Review 139(10): 3248-3264. DOI: 10.1175/MWR-D-10-05044.1

Wang, M., S. Ghan, R. Easter, M. Ovchinnikov, X. Liu, E. Kassianov, Y. Qian, W. I. Gustafson Jr., V. E. Larson, D. P. Schanen, M. Khairoutdinov and H. Morrison. 2011 The multi-scale aerosol-climate model PNNL-MMF: model description and evaluation. Geoscientific Model Development 4(1): 137-168.

vanZanten, M.C., B. B. Stevens, L. Nuijens, A. P. Siebesma, A. Ackerman, F. Burnet, A. Cheng, F. Couvreux, H. Jiang,M. Khairoutdinov, Y. Kogan, D. C. Lewellen, D. Mechem, K. Nakamura, A. Noda, B. J. Shipway, J. Slawinska, S. Wang, A. Wyszogrodzki. 2011. Controls on precipitation and cloudiness in simulations of trade-wind cumulus as observed during RICO. Journal of Advances in Modelling Earth Systems, 3, M06001

Knopf, Daniel

Knopf, D.A. and S.M. Forrester. 2011. Freezing of water and aqueous NaCl droplets coated by organic monolayers as a function of surfactant properties and water activity. Journal of Physical Chemistry A 115(22): 5579-5591.

Knopf, D.A. and Y.J. Rigg. 2011. Homogeneous ice nucleation from aqueous inorganic/organic particles representative of biomass burning: water activity, freezing temperatures, nucleation rates. Journal of Physical Chemistry A 115(5): 762-773.

Wang, B.B. and D.A. Knopf. 2011. Heterogeneous ice nucleation on particles composed of humic-like substances impacted by O-3. Journal of Geophysical Research-Atmospheres 116, D03205, doi:10.1029/2010JD014964

Alpert, P. A., J.Y. Aller and D.A. Knopf. 2011. Initiation of the ice phase by marine biogenic surfaces in supersaturated gas and supercooled aqueous phases. Physical Chemistry Chemical Physics 13(44): 19882-19894.

Knopf, D. A., P. A. Alpert, B. Wang and J. Y. Aller. 2011. Stimulation of ice nucleation by marine diatoms. Nature Geoscience 4:88–90 doi:10.1038/ngeo1037

Alpert, P.A., J.Y. Aller and D.A. Knopf. 2011. Ice nucleation from aqueous NaCl droplets with and without marine diatoms. Atmospheric Chemistry and Physics 11(12): 5539-5555.

Kaiser, J.C., N. Riemer and D.A. Knopf. 2011. Detailed heterogeneous oxidation of soot surfaces in a particle-resolved aerosol model. Atmospheric Chemistry and Physics 11(9): 4505-4520.

Alpert, P. A., J.Y. Aller and D.A. Knopf. 2011. Initiation of the ice phase by marine biogenic surfaces in supersaturated gas and supercooled aqueous phases. Physical Chemistry Chemical Physics 13(44): 19882-19894. DOI: 10.1039/c1cp21844a

Lee, Cindy

Pasqual, C., C. Lee, M. Goni, T. Tesi, A. Sanchez-Vidal, A. Calafat, M. Canals and S. Heussner. 2011. Use of organic biomarkers to trace the transport of marine and terrigenous organic matter through the southwestern canyons of the Gulf of Lion. Marine Chemistry 126(1-4): 1-12 DOI: 10.1016/j.marchem.2011.03.001

Xue, J., C. Lee, S. Wakeham and R.A. Armstrong. 2011. Using principal components analysis (PCA) with cluster analysis to study the organic geochemistry of sinking particles in the ocean. Organic Geochemistry 42(4): 356-367.

Hofmann, E.E., B. Cahill, K. Fennel, M.A.M. Friedrichs, K. Hyde, C. Lee, A. Mannino, R.G. Najjar, J.E. O’Reilly, J. Wilkin and J. Xue. 2011. Modeling the dynamics of continental shelf carbon. Annual Review of Marine Science 3:93–122.

Lonsdale, Darcy

Jiang, X., D.J. Lonsdale, and C.J. Gobler. 2011. Rapid gain and loss of evolutionary resistance to the harmful dinoflagellate Cochlodinium polykrikoides in the copepod Acartia tonsa. Limnology and Oceanography 56(3): 947-954.

Lwiza, Kamazima

Benitez-Barrios, V. M., J.L. Pelegri, A. Hernandez-Guerra, K.M.M. Lwiza, D. Gomis, P. Vélez-Belchí and S. Hernández-León. 2011. Three-dimensional circulation in the NW Africa coastal transition zone. Progress in Oceanography 91(4): 516-533 DOI: 10.1016/j.pocean.2011.07.022

Mak, John

Oikawa, P.Y., B.M. Giebel, L.D.O. Sternberg, L. Li, M.P. Timko, P.K. Swart, D.D. Riemer, J.E. Mak and M.T. Lerdau. 2011. Leaf and root pectin methylesterase activity and (13)C/(12)C stable isotopic ratio measurements of methanol emissions give insight into methanol production in Lycopersicon esculentum. New Phytologist 191(4): 1031-1040 DOI: 10.1111/j.1469-8137.2011.03770.x

Oikawa, P.Y., L. Li, M. P. Timko, J. E. Mak and M. T. Lerdau. 2011. Short term changes in methanol emission and pectin methylesterase activity are not directly affected by light in Lycopersicon esculentum. Biogeosciences 8: 1023-1030.

Munch, Stephan

Sugihara, G., J. Beddington, C-H Hsieh, E. Deyle, M. Fogarty, S.M. Glaser, R. Hewitt, A. Hollowed, R.M. May, S. B. Munch, C. Perretti, A. A. Rosenberg, S. Sandin and H. Ye. 2011. Are exploited fish populations stable? Proceedings of the National Academy of Sciences of the United States of America 108(48): E1224-E1225. DOI: 10.1073/pnas.1112033108

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Espinosa, E.P., X. Jing, M Perrigault and B. Allam. 2011. Mucosal C-type lectins in Crassostrea virginica and Mytilus edulis: potential involvement in particle capture and mucosal immunity. Journal of Shellfish Research 30(2): 503-503.

Perrigault, M., S.F. Dahl, E. Pales Espinosa, L. Gambino and B Allam. 2011. Effects of temperature on hard clam (Mercenaria mercenaria) immunity and QPX (quahog parasite unknown) disease development: II. defense parameters. Journal of Invertebrate Pathology 106 (2): 322-332.

Jing, X., E. Pales Espinosa, M. Perrigault and B. Allam. 2011. Identification, molecular characterization and expression analysis of a mucosal C-type lectin in the eastern oyster, Crassostrea virginica. Fish and Shellfish Immunology 30 (3): 851-858.

Peterson, Bradley

Wall, C. C., B. J. Peterson and C. J. Gobler. 2011. The growth of estuarine resources (Zostera marina, Mercenaria mercenaria, Crassostrea virginica, Argopecten irradians, Cyprinodon variegates) in response to nutrient loading and enhancement of suspension-feeding by adult shellfish. Estuaries and Coasts 34: 1262-1277. (Ph.D. student)

Tettelbach, S.T., B.J. Peterson, J.M. Carroll, J.R. Europe, R.M. Patricio, J. Chagnon, K. Cahill, J. Clauss, S.W.T. Hughes and C.F. Smith, CF. 2011. Resurgence of bays scallop, Argopecten irradians, populations and fisheries after large-scale restoration efforts in eastern Long Island, New York. Journal of Shellfish Research 30(2): 557-557.

Carroll, J.M., S.T. Tettlebach and B.J. Peterson. 2011. Recruitment of bay scallops to artificial seagrass units after high density free planting to a spawner sanctuary in Hallock Bay, NY. Journal of Shellfish Research 30(2): 492-492.

Pikitch, Ellen

Estes, J.A., J. Terborgh, J.S. Brashares, M. E. Power, J. Berger, W.J. Bond, S.R. Carpenter, T. Essington, R.D. Holt, Jeremy B.C. Jackson, R.J. Marquis, L. Oksanen, T. Oksanen, R.T. Paine, E.K. Pikitch, W. J. Ripple, S. Sandin, M. Scheffer, T. Schoener, J.B. Shurin, A.R.E. Sinclair, M.E. Soule, R. Vertanin and D.A. Wardle. 2011. Trophic downgrading of planet Earth. Science 333(6040): 301-306.

Erickson, D.L., A. Kahnle, M. J. Millard, E.A. Mora, G. Bryja, A. Higgs, J. Mohler, M. DuFour, G. Kenney, J. Sweka andE.K. Pikitch. 2011. Use of pop-off satellite archival tags to identify oceanic-migratory patterns for adult Atlantic Sturgeon Ascipenser oxyrinchus oxyrinchus Mitchell 1815. Journal of Applied Ichthyology, 27: 356-365. doi: 10.1111/j.1439-0426.2011.01690.x

Scranton, Mary

Monteiro, P.M.S., B. Dewitte, M.I. Scranton, A. Paulmier and A.K. van der Plas. 2011. The role of open ocean boundary forcing on seasonal to decadal-scale variability and long-term change of natural shelf hypoxia . Environmental Research Letters 6(2) Article Number: 025002 DOI: 10.1088/1748-9326/6/2/025002

Astor, Y., L. Lorenzoni and M.I. Scranton (editors). 2011. Handbook of methods for the analysis of oceanographic parameters at the Cariaco Time Series Station. Available on-line at www.us-ocb.org/documents/CARIACO_Methods.pdf.

Li, X., G.A. Cutter, R.C. Thunell, E. Tappa, W.P. Gilhooly III, T.W. Lyons, Y. Astor and M.I. Scranton. 2011. Particulate sulfur species in the water column of the Cariaco Basin. Geochimica et Cosmochimica Acta 75(1): 148-163.

Taylor, Gordon

Edgcomb, V., W. Orsi, J. Bunge, S.O Jeon, R. Christen, C. Leslin, M. Holder, G.T. Taylor, P. Suarez, R. Varela and S. Epstein. 2011. Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Species richness and endemicity.International Society for Microbial Ecology Journal, doi:10.1038/ismej.2011.6.

Orsi W., V. Edgcomb, S.O. Jeon, J. Bunge, G.T. Taylor, R. Varela and S. Epstein. 2011. Protistan microbial observatory in the Cariaco Basin, Caribbean. II. Habitat specialization. International Society for Microbial Ecology Journal, doi:10.1038/ismej.2011.7

Finiguerra, M.B., D.F. Escribano and G.T. Taylor. 2011. Light-independent mechanisms of virion inactivation in coastal marine systems. Hydrobiologia, 665 (1): 51-66.

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Wang, Dong-Ping

Wang, D-P., C.N.Flagg, K. Donohue and H.T. Rossby. 2011. Wavenumber spectrum in the Gulf Stream from shipboard ADCP observations and comparison with altimetry measurements. Journal of Physical Oceanography40(4): 840-844 DOI: 10.1175/2009JPO4330.1

Jordi, A., G. Basterretxea and D. Wang. 2011. Local versus remote wind effects on the coastal circulation of a microtidal bay in the Mediterranean Sea. Journal of Marine Systems 88(2): 312-322.

Wang, D.P. and A. Jordi. 2011. Surface frontogenesis and thermohaline intrusion in a shelfbreak front. Ocean Modelling 38(1-2): 161-170.

Zhang, Minghua

Gent, P.R., G. Danabasoglu, L.I. Donner, M.M. Holland, E.C. Hunke, S.R. Jayne, D.M. Lawrence, R.B. Neale, P.J. Rasch, M. Vertenstein, P.H. Worley, Z.L. Yang and M. Zhang. 2011. The Community Climate Model System Version 4.Journal of Climate 24(19): 4973-4991 DOI: 10.1175/2011JCLI4083.1

Liu, H.L., X.C. Liu, M. H. Zhang , W.Y. Lin. 2011. A critical evaluation of the upper ocean heat budget in the Climate Forecast System Reanalysis data for the south central equatorial Pacific. Environmental Research Letters 6(3) Article Number: 034022 DOI: 10.1088/1748-9326/6/3/034022

Zeng, X.P., W.K. Tao, T. Matsui, S.C. Xie, S. Lang, M.H. Zhang, D.O. Starr and X.W. Li. 2011. Estimating the ice crystal enhancement factor in the tropics. Journal of the Atmospheric Sciences 68(7): 1424-1434. DOI: 10.1175/2011JAS3550.1

Grieneisen, M. L. and M.H. Zhang. 2011. Correspondence: the current status of climate change research. Nature Climate Change 1(2): 72-73.

Zhu, Qingzhi

Qian, Y, Feng, H., Zhang, W., Yu, L., Zhu, Q.Z., Zhang, L., and Wang, X. (2011) Environmental Assessment of Metal Concentrations in Selected Riverine, Estuarine and Coastal Sediments. In: Heavy Metal Sediments. (Ed. Lucia H. Sanz). ISBN 978-1-61470-690-8. Nova Science Publishers, pp. 59-85.

Fan, Y., Q. Zhu, R. C. Aller and D.C. Rhoads. 2011. An in situ multispectral imaging system for planar optodes in sediments: example high resolution seasonal patterns of pH. Aquatic Geochemistry 17(4-5): 457-471.

Cao, Z.R., Q.Z. Zhu, R.C. Aller and J.Y. Aller. 2011. A fluorosensor for two-dimensional measurements of extracellular enzyme activity in marine sediments. Marine Chemistry 123(1-4): 23-31.

Zhu, Q., R. C. Aller and A. Kaushik. 2011. Analysis of vitamin B12 in seawater and marine sediment pore water using ELISA. Limnology and Oceanography: Methods 9: 515- 523.

Soto-Neira, Q. Zhu and R.C. Aller. 2011. A new spectrophotometric method to quantify dissolved manganese in marine pore waters. Marine Chemistry 127 (1-4): 56-63.

 

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