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Publications

Peer-reviewed publications by SoMAS Faculty

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Zarzycki, C. M., Jablonowski, C., Kent, J., Lauritzen, P. H., Nair, R., Reed, K. A., … & Heikes, R. (2019). DCMIP2016: the splitting supercell test case. Geoscientific Model Development, 12, 879-892.

Durán-Toro, V. M., Price, R. E., Maas, M., Brombach, C. C., Pichler, T., Rezwan, K., & Bühring, S. I. (2019). Amorphous arsenic sulfide nanoparticles in a shallow water hydrothermal system. Marine Chemistry.

Rosani, U., Shapiro, M., Venier, P., & Allam, B. (2019). A Needle in A Haystack: Tracing Bivalve-Associated Viruses in High-Throughput Transcriptomic Data. Viruses, 11(3), 205.

Huang, I. J., Sirotkin, H. I., & McElroy, A. E. (2019). Varying the exposure period and duration of neuroactive pharmaceuticals and their metabolites modulates effects on the visual motor response in zebrafish (Danio rerio) larvae. Neurotoxicology and teratology.

Thomas, D. M., & Fisher, N. S. (2019). Evaluation of body size and temperature on 137Cs uptake in marine animals. Journal of environmental radioactivity, 202, 25-31.

Klein, J. A., C. M. Tucker, C. Steger, A. Nolin, R. Reid, K. A. Hopping, E. T. Yeh, M. S. Pradhan, A. Taber, D. Molden, R. Ghate, D. Choudhury, I. Alcántara-Ayala, S. Lavorel, B. Müller, A. Grêt-Regamey, R. B. Boone, P. Bourgeron, E. Castellanos, X. Chen, S. Dong, M. Keiler, R. Seidl, J. Thorn, K. Yager. 2019. An integrated community and ecosystem-based approach to disaster risk reduction in mountain systems. Environmental Science and Policy. 94:143-152. https://doi.org/10.1016/j.envsci.2018.12.034

Yager, K., Valdivia, C., Slayback, D., Jimenez, E., Meneses, R.I., Palabral, A., Bracho, M., Romero, D., Hubbard, A., Pacheco, P., Calle, A., Alberto, H., Yana, O., Ulloa, D., Zeballos, G., Romero, A. 2019. Socio-ecological dimensions of Andean pastoral landscape change: Bridging traditional ecological knowledge and satellite image analysis in Sajama National Park, Bolivia. Regional Environmental Change. https://doi.org/10.1007/s10113-019-01466-y

Hahn, M. A., & Dheilly, N. M. (2019). Genome characterization, prevalence and transmission mode of a novel picornavirus associated with the Threespine Stickleback fish (Gasterosteus aculeatus). Journal of virology, JVI-02277.

Yang, K., Davidson, R. A., Blanton, B., Colle, B., Dresback, K., Kolar, R., … & Wachtendorf, T. (2019). Hurricane evacuations in the face of uncertainty: Use of integrated models to support robust, adaptive, and repeated decision-making. International Journal of Disaster Risk Reduction, 101093.

Ghate, V. P., Kollias, P., Crewell, S., Fridlind, A. M., Heus, T., Löehnert, U., … & Wendisch, M. (2018). The Second ARM Training and Science Application Event: Training the Next Generation of Atmospheric Scientists. Bulletin of the American Meteorological Society, (2018).

Wolfe, C. L., Hameed, S., & Chi, L. (2019). On the Drivers of Decadal Variability of the Gulf Stream North Wall. Journal of Climate, (2018).

Carroll, J. M., Furman, B. T., Jackson, L. J., Hunter, E. A., & Peterson, B. J. Propagule risk in a marine foundation species: seascape effects on Zostera marina seed predation. Journal of Ecology.

Ziegler, C. M., & Frisk, M. G. (2019). Flatfish utilize sediment blanket to facilitate thermoregulation. Marine Ecology Progress Series, 609, 179-186.

Jankowiak, J., Hattenrath‐Lehmann, T., Kramer, B. J., Ladds, M., & Gobler, C. J. (2019). Deciphering the effects of nitrogen, phosphorus, and temperature on cyanobacterial bloom intensification, diversity, and toxicity in western Lake Erie. Limnology and Oceanography.

Wurch, L., Alexander, H., Frischkorn, K. R., Haley, S., Gobler, C., & Dyhrman, S. (2019). Transcriptional shifts highlight the role of nutrients in harmful brown tide dynamics. Frontiers in Microbiology, 10, 136.

Bohorquez, J. J., Dvarskas, A., & Pikitch, E. (2019). Filling the data gap-a pressing need for advancing MPA sustainable finance. Frontiers in Marine Science, 6, 45.

Ren, X., Hall, D. L., Vinciguerra, T., Benish, S. E., Stratton, P. R., Ahn, D., Shepson, P. B., et al. (2019). Methane emissions from the Marcellus Shale in Southwestern Pennsylvania and northern West Virginia based on airborne measurements. Journal of Geophysical Research: Atmospheres, 124, 1862–1878.  https://doi.org/10.1029/2018JD029690

Iqbal, M. J., Rehman, S. U., Hameed, S., & Qureshi, M. A. (2019). Changes in Hadley circulation: the Azores high and winter precipitation over tropical northeast Africa. Theoretical and Applied Climatology, 1-8.

Zhu, J., Zhang, M., & Zeng, X. (2018). Linkage between tropical terrestrial carbon cycle and precipitation: The two anomalous years of 1979 and 1996. Atmospheric Science Letters, e876.

Griffith, A. W., Shumway, S. E., & Gobler, C. J. (2019). Differential Mortality of North Atlantic Bivalve Molluscs During Harmful Algal Blooms Caused by the Dinoflagellate, Cochlodinium (aka Margalefidinium) polykrikoides. Estuaries and Coasts, 42(1), 190-203.

Yang, K., Davidson, R. A., Vergara, H., Kolar, R. L., Dresback, K. M., Colle, B. A., … & Nozick, L. K. (2019). Incorporating inland flooding into hurricane evacuation decision support modeling. Natural Hazards, 1-22.

Reed, K. A., Bacmeister, J. T., Huff, J. J. A., Wu, X., Bates, S. C., & Rosenbloom, N. A. (2019). Exploring the impact of dust on North Atlantic hurricanes in a high‐resolution climate model. Geophysical Research Letters.

Chia, M. A., Kramer, B. J., Jankowiak, J. G., Bittencourt-Oliveira, M. D. C., & Gobler, C. J. (2019). The Individual and Combined Effects of the Cyanotoxins, Anatoxin-a and Microcystin-LR, on the Growth, Toxin Production, and Nitrogen Fixation of Prokaryotic and Eukaryotic Algae. Toxins, 11(1), 43.

Reed, K. A., Bacmeister, J. T., Huff, J. J. A., Wu, X., Bates, S. C., & Rosenbloom, N. A. (2019). Exploring the impact of dust on North Atlantic hurricanes in a high‐resolution climate model. Geophysical Research Letters.

Padilla, D. K., Charifson, D., Liguori, A., McCarty-Glenn, M., Rosa, M., & Rugila, A. (2018). Factors Affecting Gastropod Larval Development and Performance: A Systematic Review. Journal of Shellfish Research, 37(4), 851-867.

Muller-Karger F, Astor Y, Benitez-Nelson C, Buck K, Fanning K, Lorenzoni L, Montes E, Scranton M, Rueda-Roa D, Taylor G, Thunell R, Tappa E, Varela R. (2019). Scientific legacy of the CARIACO oceanographic time-series program. Annual Review of Marine Sciences 11:413–37.

Lee, C. (2019). Passing the Baton to the Next Generation: A Few Problems that Need Solving. Annual review of marine science, (0).

Taylor, G. T. (2019). Windows into Microbial Seascapes: Advances in Nanoscale Imaging and Application to Marine Sciences. Annual review of marine science, (0).

Donaton, J., Durham, K., Cerrato, R., Schwerzmann, J., & Thorne, L. H. (2019). Long-term changes in loggerhead sea turtle diet indicate shifts in the benthic community associated with warming temperatures. Estuarine, Coastal and Shelf Science.

Shipley, O. N., Lee, C. S., Fisher, N. S., Burruss, G., Frisk, M. G., Brooks, E. J., … & Madigan, D. J. (2019). Trophodynamics and mercury bioaccumulation in reef and open-ocean fishes from The Bahamas with a focus on two teleost predators. Marine Ecology Progress Series, 608, 221-232.

Xie, J., Zhang, M., & Liu, H. (2019). Role of Arctic sea ice in the 2014–15 Eurasian warm winter. Geophysical Research Letters.

Shipley, O. N., Olin, J. A., Power, M., Cerrato, R. M., & Frisk, M. G. (2018). Questioning assumptions of trophic behavior in a broadly ranging marine predator guild. Ecography.

French, M. M., & Kingfield, D. M. (2018). Dissipation Characteristics of Tornadic Vortex Signatures Associated with Long-Duration Tornadoes. Journal of Applied Meteorology and Climatology, (2018).

Zhang, T., Zhang, M., Lin, W., Lin, Y., Xue, W., Yu, H., … & Zheng, W. (2018). Automatic tuning of the Community Atmospheric Model (CAM5) by using short-term hindcasts with an improved downhill simplex optimization method. Geoscientific Model Development, 11(12), 5189-5201.

Milligan, R. J., Bernard, A. M., Boswell, K. M., Bracken-Grissom, H. D., D’Elia, M. A., deRada, S., … & Hu, C. (2018). The Application of Novel Research Technologies by the Deep Pelagic Nekton Dynamics of the Gulf of Mexico (DEEPEND) Consortium. Marine Technology Society Journal, 52(6), 81-86.

Fuirst, M., Veit, R. R., Hahn, M., Dheilly, N., & Thorne, L. H. (2018). Effects of urbanization on the foraging ecology and microbiota of the generalist seabird Larus argentatus. PloS one, 13(12), e0209200.

Herrington, A. R., Lauritzen, P. H., Taylor, M. A., Goldhaber, S., Eaton, B. E., Bacmeister, J. T., … & Ullrich, P. A. (2019). Physics–Dynamics Coupling with Element-Based High-Order Galerkin Methods: Quasi-Equal-Area Physics Grid. Monthly Weather Review, 147(1), 69-84.

Herrington, A. R., Lauritzen, P. H., Taylor, M. A., Goldhaber, S., Eaton, B. E., Bacmeister, J. T., … & Ullrich, P. A. (2018). Physics-dynamics coupling with element-based high-order Galerkin methods: quasi equal-area physics grid. Monthly Weather Review, (2018).

O’Leary, C. A., Miller, T. J., Thorson, J. T., & Nye, J. A. (2018). Understanding historical Summer Flounder (Paralichthys dentatus) abundance patterns through the incorporation of oceanography-dependent vital rates in Bayesian hierarchical models. Canadian Journal of Fisheries and Aquatic Sciences, (ja).

Frassoni, A., Castilho, D., Rixen, M., Ramirez, E., de Mattos, J. G. Z., Kubota, P., … & de Campos Velho, H. F. (2018). Building the Next Generation of Climate Modelers: Scale-Aware Physics Parameterization and the “Grey Zone” Challenge. Bulletin of the American Meteorological Society, 99(11), ES185-ES189.

Cisternas Novoa, C., Lee, C., Tang, T., de Jesus, R., & Engel, A. (2018). Effects of higher CO2 and temperature on exopolymer particle content and physical properties of marine aggregates. Frontiers in Marine Science, 5, 500.

Zheng, G., Wang, Y., Aiken, A. C., Gallo, F., Jensen, M. P., Kollias, P., … & Wood, R. (2018). Marine boundary layer aerosol in the eastern North Atlantic: seasonal variations and key controlling processes. Atmospheric Chemistry and Physics, 18(23), 17615-17635.

Tomasetti S.J., Morrell B.K., Merlo L.R., Gobler C.J. (2018). Individual and combined effects of low dissolved oxygen and low pH on survival of early stage larval blue crabs, Callinectes sapidus. PLoS ONE 13(12): e0208629. https://doi.org/10.1371/journal.pone.0208629

Khairoutdinov, M. F., & Emanuel, K. (2018). Intraseasonal Variability in a Cloud-Permitting Near-Global Equatorial Aquaplanet Model. Journal of the Atmospheric Sciences, 75(12), 4337-4355.

Siskey, M. R., Shipley, O. N., & Frisk, M. G. Skating on thin ice: Identifying the need for species‐specific data and defined migration ecology of Rajidae spp. Fish and Fisheries.

Parishani, H., Pritchard, M. S., Bretherton, C. S., Terai, C. R., Wyant, M. C., Khairoutdinov, M., & Singh, B. Insensitivity of the cloud response to surface warming under radical changes to boundary layer turbulence and cloud microphysics: Results from the UltraParameterized CAM. Journal of Advances in Modeling Earth Systems.

Dvarskas, A. (2018). Experimental ecosystem accounting for coastal and marine areas: A pilot application of the SEEA-EEA in Long Island coastal bays. Marine Policy.

Robledo, J. A. F., Yadavalli, R., Allam, B., Pales-Espinosa, E., Gerdol, M., Greco, S., … & Tracy, A. N. (2018). From the raw bar to the bench: Bivalves as models for human health. Developmental & Comparative Immunology.

Bire, S., & Wolfe, C. L. (2018). The role of eddies in buoyancy-driven eastern boundary currents. Journal of Physical Oceanography, (2018).

Rahman, S., Tamborski, J. J., Charette, M. A., & Cochran, J. K. (2018). Dissolved silica in the subterranean estuary and the impact of submarine groundwater discharge on the global marine silica budget. Marine Chemistry.

Kim, H., F. Vitart, and D.E. Waliser, 2018: Prediction of the Madden–Julian Oscillation: A Review. J. Climate, 31, 9425–9443, https://doi.org/10.1175/JCLI-D-18-0210.1

Ziegler, C. M., Zacharias, J. P., & Frisk, M. G. (2018). Migration diversity, spawning behavior and habitat utilization of Winter Flounder. Canadian Journal of Fisheries and Aquatic Sciences, (ja).

Borque, P., Luke, E. P., Kollias, P., & Yang, F. (2018). Relationship Between Turbulence and Drizzle in Continental and Marine Low Stratiform Clouds. Journal of the Atmospheric Sciences, 75(12), 4139-4148.

Humphries, G. R. W., Che-Castaldo, C., Bull, P. J., Lipstein, G., Ravia, A., Carrión, B., … & Lynch, H. J. (2018). Predicting the future is hard and other lessons from a population time series data science competition. Ecological Informatics, 48, 1-11.

Schultz, D. M., Bosart, L. F., Colle, B. A., Davies, H. C., Dearden, C., Keyser, D., … & Winters, A. C. (2018). Extratropical Cyclones: A Century Of Research On Meteorology’s Centerpiece. Meteorological Monographs.

Taylor, G. T., Suter, E. A., Pachiadaki, M. G., Astor, Y., Edgcomb, V. P., & Scranton, M. I. (2017). Temporal shifts in dominant sulfur-oxidizing chemoautotrophic populations across the Cariaco Basin’s redoxcline. Deep Sea Research Part II: Topical Studies in Oceanography.

Chandrasekhar, D., Xiao, Y., Rothfeder, R. and Finn, D. (2018). What drives household recovery after disasters? A case study of New York City after 2012 Hurricane Sandy. Journal of Environmental Planning and Management. https://doi.org/10.1080/09640568.2018.1492907

Zhou, Y., Kim, H., & Guan, B. (2018). Life Cycle of Atmospheric Rivers: Identification and Climatological Characteristics. Journal of Geophysical Research: Atmospheres.

Young, C. S., & Gobler, C. J. (2018). The ability of macroalgae to mitigate the negative effects of ocean acidification on four species of North Atlantic bivalve. Biogeosciences, 15(20), 6167-6183.

Kollias, P., Battaglia, A., Tatarevic, A., Lamer, K., Tridon, F., & Pfitzenmaier, L. (2018, October). The EarthCARE cloud profiling radar (CPR) doppler measurements in deep convection: challenges, post-processing, and science applications. In Remote Sensing of the Atmosphere, Clouds, and Precipitation VII (Vol. 10776, p. 107760R). International Society for Optics and Photonics.

Kopec, A. D., Kidd, K. A., Fisher, N. S., Bowen, M., Francis, C., Payne, K., & Bodaly, R. A. (2019). Spatial and temporal trends of mercury in the aquatic food web of the lower Penobscot River, Maine, USA, affected by a chlor-alkali plant. Science of The Total Environment, 649, 770-791.

Lamer, K., Fridlind, A. M., Ackerman, A. S., Kollias, P., Clothiaux, E. E., & Kelley, M. (2018). 2-SIM: a GCM-oriented ground-observation forward-simulator framework for objective evaluation of cloud and precipitation phase. Geoscientific Model Development, 11(10), 4195-4214.

Wang, C., Cerrato, R. M., & Fisher, N. S. (2018). Temporal changes in 137Cs concentrations in fish, sediments, and seawater off Fukushima Japan. Environmental Science & Technology.

Zipori, A., Reicher, N., Erel, Y., Rosenfeld, D., Sandler, A., Knopf, D. A., & Rudich, Y. (2018). The role of secondary ice processes in mid‐latitude continental clouds. Journal of Geophysical Research: Atmospheres.

Khairoutdinov, M. F., & Emanuel, K. (2018). Intraseasonal Variability in a Cloud-Permitting Near-Global Equatorial Aqua-Planet Model. Journal of the Atmospheric Sciences, (2018).

Zipori, A., Reicher, N., Erel, Y., Rosenfeld, D., Sandler, A., Knopf, D. A., & Rudich, Y. (2018). The Role of Secondary Ice Processes in Midlatitude Continental Clouds. Journal of Geophysical Research: Atmospheres.

Xiao, Y., Wu, K., Finn, D. and Chandrasekar, D. (2018) “Community Businesses as Social Units in Post-Disaster Recovery,” Journal of Planning Education and Research. https://doi.org/10.1177/0739456X18804328

Stevens, A. M., & Gobler, C. J. (2018). Interactive effects of acidification, hypoxia, and thermal stress on growth, respiration, and survival of four North Atlantic bivalves. Marine Ecology Progress Series, 604, 143-161.

Stevens, A. M., & Gobler, C. J. (2018). Interactive effects of acidification, hypoxia, and thermal stress on growth, respiration, and survival of four North Atlantic bivalves. Marine Ecology Progress Series, 604, 143-161.

Lau, Y. T., Santos, B., Barbosa, M., Espinosa, E. P., & Allam, B. (2018). Regulation of apoptosis-related genes during interactions between oyster hemocytes and the alveolate parasite Perkinsus marinus. Fish & shellfish immunology.

Zhu, J., Zhang, M., Zhang, Y., Zeng, X., & Xiao, X. (2018). Response of tropical terrestrial gross primary production to the super El Niño event in 2015. Journal of Geophysical Research: Biogeosciences.

Stepanuk, J. E., Read, A. J., Baird, R. W., Webster, D. L., & Thorne, L. H. (2018). Spatiotemporal patterns of overlap between short-finned pilot whales and the US pelagic longline fishery in the Mid-Atlantic Bight: An assessment to inform the management of fisheries bycatch. Fisheries Research, 208, 309-320.

Röhr, M. E., Holmer, M., Baum, J. K., Björk, M., Chin, D., Chalifour, L., Peterson, B., … & Duffy, J. E. Blue carbon storage capacity of temperate eelgrass (Zostera marina) meadows. Global Biogeochemical Cycles.

Ganetis, S. A., Colle, B. A., Yuter, S. E., & Hoban, N. P. (2018). Environmental Conditions Associated with Observed Snowband Structures within Northeast US Winter Storms. Monthly Weather Review, (2018).

Rossby, T., Flagg, C., Chafik, L., Harden, B., & Søiland, H. (2018). A Direct Estimate of Volume, Heat, and Freshwater Exchange Across the Greenland‐Iceland‐Faroe‐Scotland Ridge. Journal of Geophysical Research: Oceans.

Rossby, T., Flagg, C., Chafik, L., Harden, B., & Søiland, H. (2018). A direct estimate of volume, heat and fresh water exchange across the Greenland‐Iceland‐Faroe‐Scotland Ridge. Journal of Geophysical Research: Oceans.

Rossby, T., Flagg, C., Chafik, L., Harden, B., & Søiland, H. (2018). A direct estimate of volume, heat and fresh water exchange across the Greenland‐Iceland‐Faroe‐Scotland Ridge. Journal of Geophysical Research: Oceans.

Griffith, A. W., Shumway, S. E., & Gobler, C. J. (2018). Differential Mortality of North Atlantic Bivalve Molluscs During Harmful Algal Blooms Caused by the Dinoflagellate, Margalefidinium polykrikoides. Estuaries and Coasts, 1-14.

Illingworth, A. J., Battaglia, A., Bradford, J., Forsythe, M., Joe, P., Kollias, P., … & Midthassel, R. (2018). WIVERN: A new satellite concept to provide global in-cloud winds, precipitation and cloud properties. Bulletin of the American Meteorological Society, (2018).

Küchler, N., Kneifel, S., Kollias, P., & Löhnert, U. Revisiting liquid water content retrievals in warm stratified clouds: The modified Frisch. Geophysical Research Letters.

Frisk, M. G., Dolan, T. E., McElroy, A. E., Zacharias, J. P., Xu, H., & Hice, L. A. (2018). Assessing the drivers of the collapse of Winter Flounder: Implications for management and recovery. Journal of Sea Research, 141, 1-13.

Gownaris, N. J., Rountos, K. J., Kaufman, L., Kolding, J., Lwiza, K. M. M., & Pikitch, E. K. (2018). Water level fluctuations and the ecosystem functioning of lakes. Journal of Great Lakes Research.

Hameed, S., Wolfe, C. L., & Chi, L. (2018). Impact of the Atlantic Meridional Mode on Gulf Stream North Wall Position. Journal of Climate, (2018).

Armstrong, C. T., Erdner, D. L., McClelland, J. W., Sanderson, M. P., Anderson, D. M., Gobler, C. J., & Smith, J. L. (2018). Impact of nitrogen chemical form on the isotope signature and toxicity of a marine dinoflagellate. Marine Ecology Progress Series, 602, 63-76.

Ohnemus, D. C., Krause, J. W., Brzezinski, M. A., Collier, J. L., Baines, S. B., & Twining, B. S. (2018). The chemical form of silicon in marine Synechococcus. Marine Chemistry.

Rudd, J. W., Bodaly, R. A., Fisher, N. S., Kelly, C. A., Kopec, D., & Whipple, C. (2018). Fifty years after its discharge, methylation of legacy mercury trapped in the Penobscot Estuary sustains high mercury in biota. Science of The Total Environment, 642, 1340-1352.

Smith L.C., Dheilly, N.M., et al. (2018) Echinodermata: The Complex Immune System in Echinoderms. In: Cooper E. (eds) Advances in Comparative Immunology. Springer, Cham

Zhang, Z., & Colle, B. A. (2018). Impact of Dynamical Downscaling Two CMIP5 Models on the Historical and Future Changes in Winter Extratropical Cyclones Along the East Coast of North America. Journal of Climate, (2018).

Bokuniewicz, H., & Jang, S. G. (2018). Dredging Intensity: A Spatio-Temporal Indicator for Managing Marine Resources. Environmental management, 62(5), 987-994.

Zhang, M., Mariotti, A., Lin, Z., Ramasmamy, V., Lamarque, J., Xie, Z., & Zhu, J. (2018). Coordination to Understand and Reduce Global Model Biases by US and Chinese Institutions. Bulletin of the American Meteorological Society, (2018).

Zheng, C., Kar-Man Chang, E., Kim, H. M., Zhang, M., & Wang, W. (2018). Impacts of the Madden–Julian Oscillation on Storm-Track Activity, Surface Air Temperature, and Precipitation over North America. Journal of Climate, 31(15), 6113-6134.

Thomas, D. M., Lee, C. S., & Fisher, N. S. (2018). Bioaccumulation and trophic transfer of 137 Cs in marine and freshwater plankton. Chemosphere.

Waller R.F., Cleves P.A., Rubio-Brotons M., Woods A., Bender S.J., Edgcomb V., Gann, E.R., Jones, A.C., Teytelman, L., von Dassow, P., Wilhelm, S.W., and Collier, J.L. (2018) Strength in numbers: Collaborative science for new experimental model systems. PLoS Biol 16(7): e2006333. https://doi.org/10.1371/journal.pbio.2006333

Chang, E. K. M. (2018). CMIP5 Projected Change in Northern Hemisphere Winter Cyclones with Associated Extreme Winds. Journal of Climate, (2018).

Young, C. S., Peterson, B. J., & Gobler, C. J. (2018). The Bloom-Forming Macroalgae, Ulva, Outcompetes the Seagrass, Zostera marina, Under High CO 2 Conditions. Estuaries and Coasts, 1-16.

Wirth, C., & Warren, J. D. (2018). Spatial and temporal variation in toadfish (Opsanus tau) and cusk eel (Ophidion marginatum) mating choruses in eelgrass (Zostera marina) beds in a shallow, temperate estuary. Bioacoustics, 1-18.

He, B., Liu, P., Zhu, Y., & Hu, W. (2018). Prediction and predictability of Northern Hemisphere persistent maxima of 500-hPa geopotential height eddies in the GEFS. Climate Dynamics, 1-17.

Li, X., Doherty, A. C., Brownawell, B., & Lara-Martin, P. A. (2018). Distribution and diagenetic fate of synthetic surfactants and their metabolites in sewage-impacted estuarine sediments. Environmental Pollution.

Phillips, J. M., Bricelj, V. M., Mitch, M., Cerrato, R. M., MacQuarrie, S., & Connell, L. B. (2018). Biogeography of resistance to paralytic shellfish toxins in softshell clam, Mya arenaria (L.), populations along the Atlantic coast of North America. Aquatic Toxicology.

Liou, Y. C., Bluestein, H. B., French, M. M., & Wienhoff, Z. B. (2018). Single-Doppler velocity retrieval of the wind field in a tornadic supercell using mobile, phased-array, Doppler radar data. Journal of Atmospheric and Oceanic Technology, (2018).

Witts, J. D., Landman, N. H., Garb, M. P., Boas, C., Larina, E., Rovelli, R., … & Cochran, J. K. (2018). A fossiliferous spherule-rich bed at the Cretaceous–Paleogene (K–Pg) boundary in Mississippi, USA: Implications for the K–Pg mass extinction event in the Mississippi Embayment and Eastern Gulf Coastal Plain. Cretaceous Research.

Wirth, V., Riemer, M., Chang, E. K., & Martius, O. (2018). Rossby Wave Packets on the Midlatitude Waveguide—A Review. Monthly Weather Review, (2018).

Borges, A. V., Speeckaert, G., Champenois, W., Scranton, M. I., & Gypens, N. (2018). Productivity and temperature as drivers of seasonal and spatial variations of dissolved methane in the Southern Bight of the North Sea. Ecosystems, 21(4), 583-599.

Foley, C. M., Hart, T., & Lynch, H. J. (2018). King Penguin populations increase on South Georgia but explanations remain elusive. Polar Biology, 41(6), 1111-1122.

Chen, Y.S., Verlinde, J., Clothiaux, E.E., Ackerman, A.S., Fridlind, A.M., Chamecki, M., Kollias, P., Kirkpatrick, M.P., Chen, B.C., Yu, G. and Avramov, A., (2018). On the forward modeling of radar Doppler spectrum width from LES: Implications for model evaluation. Journal of Geophysical Research: Atmospheres.

Bassim, S., & Allam, B. (2018). SNP hot-spots in the clam parasite QPX. BMC genomics, 19(1), 486.

Hinrichs, C., Flagg, C.N. & Wilson, R.E. Estuaries and Coasts: Great South Bay After Sandy: Changes in Circulation and Flushing due to New Inlet (2018). https://doi.org/10.1007/s12237-018-0423-6

Pikitch, E. K. (2018). A tool for finding rare marine species. Science, 360(6394), 1180 LP-1182. 

Feng, H., Qian, Y., Cochran, J. K., Zhu, Q., Heilbrun, C., Li, L., … & Nazareski, E. (2018). Seasonal differences in trace element concentrations and distribution in Spartina alterniflora root tissue. Chemosphere, 204, 359-370.

Landman, N. H., Cochran, J. K., Slovacek, M., Larson, N. L., Garb, M. P., Brezina, J., & Witts, J. D. (2018). Isotope sclerochronology of ammonites (Baculites Compressus) from methane seep and non-seep sites in the Late Cretaceous Western Interior Seaway, USA: Implications for ammonite habitat and mode of life. American Journal of Science, 318(6), 603-639.

Tonjes, D. J., McElroy, A. E., Barnes-Pohjonen, R. K., Ninivaggi, D. V., Dawydiak, W., Greene, G. T., & Brownawell, B. J. (2018). Fate of methoprene in temperate salt marsh ditches following aerial applications. The Science of the total environment, 642, 394.

Madigan, D. J., Snodgrass, O. E., & Fisher, N. S. (2018). From migrants to mossbacks: tracer-and tag-inferred habitat shifts in the California yellowtail Seriola dorsalis. Marine Ecology Progress Series, 597, 221-230.

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Erickson, M. J., Colle, B. A., & Charney, J. J. (2018). Evaluation and Postprocessing of Ensemble Fire Weather Predictions over the Northeast United States. Journal of Applied Meteorology and Climatology, 57(5), 1135-1153.

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Ray, R., Michaud, E., Aller, R. C., Vantrepotte, V., Gleixner, G., Walcker, R., … & Thouzeau, G. The sources and distribution of carbon (DOC, POC, DIC) in a mangrove dominated estuary (French Guiana, South America). Biogeochemistry, 1-25.

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Berdalet, E., Kudela, R., Banas, N. S., Bresnan, E., Burford, M. A., Davidson, K., Gobler, C.J. … & Montresor, M. (2018). GlobalHAB: fostering international coordination on harmful algal bloom research in aquatic systems. Global ecology and oceanography of harmful algal blooms. Springer, Cham, 425-447.

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Wang, J., Kim, H. M., Chang, E. K., & Son, S. W. Modulation of the MJO and North Pacific Storm Track Relationship by the QBO. Journal of Geophysical Research: Atmospheres.

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Chia, M. A., Jankowiak, J. G., Kramer, B. J., Goleski, J. A., Huang, I. S., Zimba, P. V., … & Gobler, C. J. (2018). Succession and toxicity of Microcystis and Anabaena (Dolichospermum) blooms are controlled by nutrient-dependent allelopathic interactions. Harmful Algae, 74, 67-77.

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Yu, H., & Zhang, M. (2018). Explaining the Year‐to‐Year Variability of the Eastern Pacific Inter‐Tropical Convergence Zone (ITCZ) in the Boreal Spring. Journal of Geophysical Research: Atmospheres.

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Hartman, R., Espinosa, E. P., & Allam, B. (2018). Identification of clam plasma proteins that bind its pathogen Quahog Parasite Unknown. Fish & Shellfish Immunology, 77, 214-221.

Davidson, R. A., Nozick, L. K., Wachtendorf, T., Blanton, B., Colle, B., Kolar, R. L., … & Leonardo, N. (2018). An Integrated Scenario Ensemble‐Based Framework for Hurricane Evacuation Modeling: Part 1—Decision Support System. Risk analysis.

Zhang, D., Wang, Z., Kollias, P., Vogelmann, A. M., Yang, K., & Luo, T. (2018). Ice particle production in mid-level stratiform mixed-phase clouds observed with collocated A-Train measurements. Atmospheric Chemistry and Physics, 18(6), 4317-4327.

Erickson, M. J., Colle, B. A., & Charney, J. J. (2018). Evaluation and Post-Processing of Ensemble Fire Weather Predictions over the Northeast United States. Journal of Applied Meteorology and Climatology, (2018).

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Gobler, C. J., Merlo, L. R., Morrell, B. K., & Griffith, A. W. (2018). Temperature, Acidification, and Food Supply Interact to Negatively Affect the Growth and Survival of the Forage Fish, Menidia beryllina (Inland Silverside), and Cyprinodon variegatus (Sheepshead Minnow). Frontiers in Marine Science, 5, 86.

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Espinosa, E. P., & Allam, B. (2018). Reverse genetics demonstrate the role of mucosal C-type lectins in food particle selection in the oyster Crassostrea virginica. Journal of Experimental Biology, jeb-174094.

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Alexander, M. A., Scott, J. D., Friedland, K. D., Mills, K. E., Nye, J. A., Pershing, A. J., & Thomas, A. C. (2018). Projected sea surface temperatures over the 21st century: Changes in the mean, variability and extremes for large marine ecosystem regions of Northern Oceans. Elem Sci Anth, 6(1), 9. DOI: http://doi.org/10.1525/elementa.191

Dasgupta, S., Choyke, S., Ferguson, P. L., & McElroy, A. E. (2018). Antioxidant responses and oxidative stress in sheepshead minnow larvae exposed to Corexit 9500® or its component surfactant, DOSS. Aquatic Toxicology, 194, 10-17.

Zhang, Y., Xie, S., Klein, S. A., Marchand, R., Kollias, P., Clothiaux, E. E., … & Tang, S. (2018). The ARM Cloud Radar Simulator for Global Climate Models: A New Tool for Bridging Field Data and Climate Models. Bulletin of the American Meteorological Society, (2017).

Knopf, D. A., Alpert, P. A., Wang, B., The Role of Organic Aerosol in Atmospheric Ice Nucleation: A Review. ACS Earth Space Chem., Article ASAP DOI: 10.1021/acsearthspacechem.7b00120.

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Flanagan, A. M., Flood, R. D., Frisk, M. G., Garza, C. D., Lopez, G. R., Maher, N. P. & Cerrato, R. M. (2018). The relationship between observational scale and explained variance in benthic communities. PLoS ONE, 13(1), e0189313.

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Rémillard, J., Fridlind, A. M., Ackerman, A. S., Tselioudis, G., Kollias, P., Mechem, D. B., … & Chuang, P. Y. (2017). Use of cloud radar Doppler spectra to evaluate stratocumulus drizzle size distributions in large-eddy simulations with size-resolved microphysics. Journal of Applied Meteorology and Climatology, 56(12), 3263-3283.

Chen, J., Liu, Y., Zhang, M., & Peng, Y. (2017). Height Dependency of Aerosol‐Cloud Interaction Regimes. Journal of Geophysical Research: Atmospheres.

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Suter EA, Pachiadaki MG, Taylor GT, Astor Y, Edgcomb VP. (2017) Free-living chemoautotrophic and particle-attached heterotrophic prokaryotes dominate microbial assemblages along a pelagic marine redox gradient. Environ Microbiol, doi:10.1111/1462-2920.13997.

Thorne, L. H., Foley, H. J., Baird, R. W., Webster, D. L., Swaim, Z. T., & Read, A. J. (2017). Movement and foraging behavior of short-finned pilot whales in the Mid-Atlantic Bight: importance of bathymetric features and implications for management. Marine Ecology Progress Series, 584, 245-257.

Berdalet, E., R. Kudela, E. Urban, H. Enevoldsen, N.S. Banas, E. Bresnan, M. Burford, K. Davidson, C.J. Gobler, B. Karlson, P.T. Lim, L. Mackenzie, M. Montresor, V.L. Trainer, G. Usup, and K. Yin. 2017. GlobalHAB: A new program to promote international research, observations, and modeling of harmful algal blooms in aquatic systems. Oceanography 30(1):70–81, https://doi.org/10.5670/oceanog.2017.111.

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Baumann, H., & Nye, J. (2017). Fatty acid profiles of M. menidia females and their unfertilized eggs.

Baumann, H., & Nye, J. (2017). Survival, length, and growth responses of M. menidia offspring from different females exposed to contrasting CO2 environments.

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Dasgupta, S., Choyke, S., Ferguson, P. L., & McElroy, A. E. (2018). Antioxidant responses and oxidative stress in sheepshead minnow larvae exposed to Corexit 9500® or its component surfactant, DOSS. Aquatic Toxicology, 194, 10-17.

Korfe, N. G., & Colle, B. A. (2017). Evaluation of Cool-Season Extratropical Cyclones in a Multi-Model Ensemble for Eastern North America and the Western Atlantic Ocean. Weather and Forecasting, (2017).

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Saraf, S. R., Frenkel, A., Harke, M. J., Jankowiak, J. G., Gobler, C. J., & McElroy, A. E. (2017). Effects of Microcystis on development of early life stage Japanese medaka (Oryzias latipes): Comparative toxicity of natural blooms, cultured Microcystis and microcystin-LR. Aquatic Toxicology.

GOBLER, C. J. (2017). PDD BASED ON THE FINAL ENVIRONMENTAL IMPACT STATEMENT.

Zhou, X., & Khairoutdinov, M. F. (2017). Changes in Temperature and Precipitation Extremes in Superparameterized CAM in Response to Warmer SSTs. Journal of Climate, 30(24), 9827-9845.

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Zarnoch, C. B., Hoellein, T. J., Furman, B. T., & Peterson, B. J. (2017). Eelgrass meadows, Zostera marina (L.), facilitate the ecosystem service of nitrogen removal during simulated nutrient pulses in Shinnecock Bay, New York, USA. Marine Pollution Bulletin, 124(1), 376-387.

Gobler, C. J., Hattenrath-Lehmann, T. K., Doherty, O. M., Griffith, A. W., Kang, Y., & Litaker, R. W. (2017). Reply to Dees et al.: Ocean warming promotes species-specific increases in the cellular growth rates of harmful algal blooms. Proceedings of the National Academy of Sciences, 201715749.

Fratantoni, D. M., O’Brien, J. K., Flagg, C., & Rossby, T. (2017). AXIS–an Autonomous eXpendable Instrument System. Journal of Atmospheric and Oceanic Technology, (2017).

Fryer, P., Wheat, G., Williams, T., and the Expedition 366 Scientists, 2017. Expedition 366 Preliminary Report: Mariana Convergent Margin and South Chamorro Seamount. International Ocean Discovery Program. https://doi.org/10.14379/iodp.pr.366.2017

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Küchler, N., Kneifel, S., Löhnert, U., Kollias, P., Czekala, H., & Rose, T. (2017). A W-Band Radar–Radiometer System for Accurate and Continuous Monitoring of Clouds and Precipitation. Journal of Atmospheric and Oceanic Technology, 34(11), 2375-2392.

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Xu, H., Miller, T. J., Hameed, S., Alade, L. A., & Nye, J. A. Evaluating the utility of the Gulf Stream Index for predicting recruitment of Southern New England‐Mid Atlantic yellowtail flounder. Fisheries Oceanography. DOI: 10.1111/fog.12236

Zhou, Y., & Kim, H. M. (2017). Prediction of atmospheric rivers over the North Pacific and its connection to ENSO in the North American multi-model ensemble (NMME). Climate Dynamics, 1-15.

Xu, N., Wang, M., Tang, Y., Zhang, Q., Duan, S., & Gobler, C. J. (2017). Acute toxicity of the cosmopolitan bloom-forming dinoflagellate Akashiwo sanguinea to finfish, shellfish, and zooplankton. Aquatic Microbial Ecology, 80(3), 209-222.

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Lee, C. S., & Fisher, N. S. (2017). Bioaccumulation of methylmercury in a marine diatom and the influence of dissolved organic matter. Marine Chemistry.

Dasgupta, S., & McElroy, A. E. (2017). Cytotoxicity and CYP1A inhibition in rainbow trout liver (RTL-W1) cell lines exposed to dispersant Corexit 9500 and its major surfactant components. Toxicology in Vitro, 44, 377-381.

Tinoco, A. I., Furman, B. T., Darnell, K. M., & Peterson, B. J. (2017). Submerged aquatic vegetation, topography and flow characteristics in the upper, tidal Hudson River: Progress toward a predictive habitat model. Aquatic Botany, 142, 53-60.

Fan, S., Knopf, D. A., Heymsfield, A. J., & Donner, L. J. (2017). Modeling of aircraft measurements of ice crystal concentration in the Arctic and a parameterization for mixed-phase cloud. Journal of the Atmospheric Sciences, (2017).

Rahman, S., Aller, R. C., & Cochran, J. K. (2017). The missing silica sink: revisiting the marine sedimentary Si cycle using cosmogenic 32Si. Global Biogeochemical Cycles, 31, 1559-1578.

Lynch, H. J., Foley, C. M., Lynch, M. A., & Thorne, L. H. (2017). Response to Van Norman. BioScience, bix109.

Shipley, O.N., Murchie, K.J., Frisk, M.G., Brooks, E.J., Shea, O.R.O., & Power M. (2017). Low lipid and urea effects and inter-tissue comparisons of stable isotope signatures in three nearshore elasmobranchs. Marine Ecology Progress Series, 579, 233-238.

Kim, H. M., & Kim, B. M. (2017). Relative Contributions of Atmospheric Energy Transport and Sea Ice Loss to the Recent Warm Arctic Winter. Journal of Climate, 30(18), 7441-7450.

Griffith, A. W., & Gobler, C. J. (2017). Transgenerational exposure of North Atlantic bivalves to ocean acidification renders offspring more vulnerable to low pH and additional stressors. Scientific Reports, 7.

Tamborski, J. J., Cochran, J. K., & Bokuniewicz, H. J. (2017). Submarine groundwater discharge driven nitrogen fluxes to Long Island Sound, NY: Terrestrial vs. marine sources. Geochimica et Cosmochimica Acta, 218, 40-57.

Fan, J., Han, B., Varble, A., Morrison, H., North, K., Kollias, P., … & Lin, Y. (2017). Cloud‐resolving model intercomparison of an MC3E squall line case: Part I—Convective updrafts. Journal of Geophysical Research: Atmospheres, 122(17), 9351-9378.

Zhou, X., & Khairoutdinov, M. F. (2017). Changes in Temperature and Precipitation Extremes in Super-parameterized CAM in Response to Warmer SSTs. Journal of Climate, (2017).

North, K. W., Oue, M., Kollias, P., Giangrande, S. E., Collis, S. M., & Potvin, C. K. (2017). Vertical air motion retrievals in deep convective clouds using the ARM scanning radar network in Oklahoma during MC3E. Atmospheric Measurement Techniques, 10(8), 2785.

Hu, Z., Wang, D. P., He, X., Li, M., Wei, J., Pan, D., & Bai, Y. (2017). Episodic surface intrusions in the Yellow Sea during relaxation of northerly winds. Journal of Geophysical Research: Oceans.

Thomas, A. C., Pershing, A. J., Friedland, K. D., Nye, J. A., Mills, K. E., Alexander, M. A., … & Henderson, M. E. (2017). Seasonal trends and phenology shifts in sea surface temperature on the North American northeastern continental shelf. Elem Sci Anth, 5.

Waugh, S., & Aller, R. C. (2017). N 2 production and fixation in deep-tier burrows of Squilla empusa in muddy sediments of Great Peconic Bay. Journal of Sea Research.

Tang, S., Zhang, M., & Xie, S. (2017). Investigating the Dependence of SCM Simulated Precipitation and Clouds on the Spatial Scale of Large‐Scale Forcing at SGP. Journal of Geophysical Research: Atmospheres.

Naeger, A. R., Colle, B. A., & Molthan, A. (2017). Evaluation of Cloud Microphysical Schemes for a Warm Frontal Snowband During the GPM Cold Season Precipitation Experiment (GCPEx). Monthly Weather Review, (2017).

Pikitch, E. K., Boersma, P. D., Boyd, I. L., Conover, D. O., Cury, P., Essington, T. E., … & Plaganyi, E. (2017). The strong connection between forage fish and their predators: A response to Hilborn et al.(2017). Fisheries Research.

Young, C. S., & Gobler, C. J. (2017). The organizing effects of elevated CO2 on competition among estuarine primary producers. Scientific Reports, 7.

McCartain, L. D., Townsend, M., Thrush, S. F., Wethey, D. S., Woodin, S. A., Volkenborn, N., & Pilditch, C. A. (2017). The effects of thin mud deposits on the behaviour of a deposit-feeding tellinid bivalve: implications for ecosystem functioning. Marine and Freshwater Behaviour and Physiology, 50(4), 239-255.

Wehrmann, L.M., Riedinger, N., Brunner, B., Kamyshny Jr., A., Hubert, C.R.J., Herbert, L.C., Brüchert, V., Jørgensen, B.B., Ferdelman, T.G., Formolo M.J., 2017. Iron-controlled oxidative sulfur cycling recorded in the distribution and isotopic composition of sulfur species in glacially influenced fjord sediments of west Svalbard. Chemical Geology 466, 678-695.

Mao, X., Waugh, S., Langlois, K., Collier, J.L., Price, R., Garvey, J., Gobler, C. and Walker, H., 2017. Nitrogen transformations and microbial characterization in passive nitrogen removing biofilters (NRBs) for onsite wastewater treatment. Proceedings of the Water Environment Federation, 2017(15), pp.898-906.

Bond, M. E., Valentin-Albanese, J., Babcock, E. A., Abercrombie, D., Lamb, N. F., Miranda, A., Pikitch, E.K. & Chapman, D. D. (2017). Abundance and size structure of a reef shark population within a marine reserve has remained stable for more than a decade. Marine Ecology Progress Series, 576, 1-10.

Narenpitak, P., Bretherton, C. S., & Khairoutdinov, M. F. (2017). Cloud and circulation feedbacks in a near‐global aquaplanet cloud‐resolving model. Journal of Advances in Modeling Earth Systems.

Sollich, M; Yoshinaga, M.Y.; Häusler, S; Price, R.E.; Hinrichs, K-U; Bühring, S.I. (2017). Heat stress dictates microbial lipid composition along a thermal gradient in marine sediments. Frontiers in Microbiology.

J. Yu, R. E. Wilson and C. N. Flagg 2017 A Hydraulic Model for Multiple-Bay-Inlet Systems onBarrier Islands. Estuaries and Coasts DOI 10.1007/s12237-017-0294-2

Taylor GT, Suter EA, Li ZQ, Chow S, Stinton D, Zaliznyak T and Beaupré SR (2017) Single-Cell Growth Rates in Photoautotrophic Populations Measured by Stable Isotope Probing and Resonance Raman Microspectrometry. Front. Microbiol. 8:1449. doi: 10.3389/fmicb.2017.01449

Li, Y., & Zhang, M. (2017). The Role of Shallow Convection over the Tibetan Plateau. Journal of Climate, 30(15), 5791-5803.

Hattenrath-Lehmann, T. K., & Gobler, C. J. (2017). Identification of unique microbiomes associated with harmful algal blooms caused by Alexandrium fundyense and Dinophysis acuminata. Harmful Algae, 68, 17-30.

Bond, M. E., Valentin-Albanese, J., Babcock, E. A., Abercrombie, D., Lamb, N. F., Miranda, A., Pikitch, E.K. & Chapman, D. D. (2017). Abundance and size structure of a reef shark population within a marine reserve has remained stable for more than a decade. Marine Ecology Progress Series, 576, 1-10.

Kim, H. M. (2017). The impact of the mean moisture bias on the key physics of MJO propagation in the ECMWF reforecast. Journal of Geophysical Research: Atmospheres, 122(15), 7772-7784.

Zhang, Z., & Colle, B. A. (2017). Changes in Extratropical Cyclone Precipitation and Associated Processes During the 21st Century over Eastern North America and the Western Atlantic Using a Cyclone-Relative Approach. Journal of Climate, (2017).

Collier, J. L., Geraci-Yee, S., Lilje, O., & Gleason, F. H. (2017). Possible impacts of zoosporic parasites in diseases of commercially important marine mollusc species: part II. Labyrinthulomycota. Botanica Marina, 60(4), 409-417.

Gleason, F. H., Lilje, O., Dang, C., Geraci-Yee, S., & Collier, J. L. (2017). Possible impacts of zoosporic parasites in diseases of commercially important marine mollusc species: part I. Perkinsozoa. Botanica Marina, 60(4), 401-408.

Dheilly NM, Bolnick D, Bordenstein S, Brindley PJ, Figueres C, Holmes EC, Martinez Martinez J, Phillips AJ, Poulin R, Rosario K (2017). Parasite Microbiome Project: Systematic investigation of microbiome dynamics within and across parasite-host interactions mSystems 2(4)

McDowall, P., & Lynch, H. J. (2017). The importance of topographically corrected null models for analyzing ecological point processes. Ecology.

Madigan, D. J., Baumann, Z., Snodgrass, O. E., Dewar, H., Berman-Kowalewski, M., Weng, K. C., … & Fisher, N. S. (2017). Assessing Fukushima-derived radiocesium in migratory Pacific predators. Environmental Science & Technology, 51(16), 8962-8971.

Scott, R. C., Lubin, D., Vogelmann, A. M., & Kato, S. (2017). West Antarctic Ice Sheet cloud cover and surface radiation budget from NASA A-train satellites. Journal of Climate, 30(16), 6151-6170.

Rountos, K. J., Gobler, C. J., & Pikitch, E. K. (2017). Ontogenetic Differences in Swimming Behavior of Fish Exposed to the Harmful Dinoflagellate Cochlodinium polykrikoides. Transactions of the American Fisheries Society, 146(5), 1081-1091.

Zhou, X., Heus, T., & Kollias, P. (2017). Influences of Drizzle on Stratocumulus Cloudiness and Organization. Journal of Geophysical Research: Atmospheres.

Monastero, R. N., Karimi, R., Nyland, J. F., Harrington, J., Levine, K., & Meliker, J. R. (2017). Mercury exposure, serum antinuclear antibodies, and serum cytokine levels in the Long Island Study of Seafood Consumption: A cross-sectional study in NY, USA. Environmental Research, 156, 334-340.

Parishani, H., Pritchard, M. S., Bretherton, C. S., Wyant, M. C., & Khairoutdinov, M. (2017). Toward low cloud‐permitting cloud superparameterization with explicit boundary layer turbulence. Journal of Advances in Modeling Earth Systems.

Henderson, M. E., Mills, K. E., Thomas, A. C., Pershing, A. J., & Nye, J. A. Effects of spring onset and summer duration on fish species distribution and biomass along the Northeast United States continental shelf. Reviews in Fish Biology and Fisheries, 1-14.

Kang, Y., Kudela, R. M., & Gobler, C. J. Quantifying nitrogen assimilation rates of individual phytoplankton species and plankton groups during harmful algal blooms via sorting flow cytometry. Limnology and Oceanography: Methods.

Tridon, F., Battaglia, A., Luke, E., & Kollias, P. (2017). Rain retrieval from dual‐frequency radar Doppler spectra: validation and potential for a midlatitude precipitating case‐study. Quarterly Journal of the Royal Meteorological Society, 143(704), 1364-1380.

Taylor, D. (2017) Palm Up, Palm Down. San Antonio, TX: Wings Press.

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Nicolas, J. P., Vogelmann, A. M., Scott, R. C., Wilson, A. B., Cadeddu, M. P., Bromwich, D. H., … & Powers, H. H. (2017). January 2016 extensive summer melt in West Antarctica favoured by strong El Niño. Nature communications, 8, ncomms15799.

Melnychuk, M. C., Dunton, K. J., Jordaan, A., McKown, K. A., & Frisk, M. G. (2017). Informing conservation strategies for the endangered Atlantic sturgeon using acoustic telemetry and multi‐state mark–recapture models. Journal of Applied Ecology, 54(3), 914-925.

Miller, C., Karimi, R., Zhang, Q., Yang, J., & Meliker, J. (2017). Mercury, eicosapentanoic acid and docosahexaenoic acid demonstrate limited effect on plasma paraoxonase-1 activity and blood pressure among avid seafood consumers in the Long Island Study of Seafood Consumption, NY, USA. International journal of hygiene and environmental health, 220(2), 373-377.

Isaacman-VanWertz, G., Massoli, P., O’Brien, R.E., Nowak, J.B., Canagaratna, M.R., Jayne, J.T., Worsnop, D.R., Su, L., Knopf, D.A., Misztal, P.K. and Arata, C., (2017). Using advanced mass spectrometry techniques to fully characterize atmospheric organic carbon: current capabilities and remaining gaps. Faraday Discussions.

Acquistapace, C., Kneifel, S., Löhnert, U., Kollias, P., Maahn, M., & Bauer-Pfundstein, M. (2017). Optimizing observations of drizzle onset with millimeter-wavelength radars. Atmospheric Measurement Techniques, 10(5), 1783-1802.

Chen, J., Pycke, B. F., Brownawell, B. J., Kinney, C. A., Furlong, E. T., Kolpin, D. W., & Halden, R. U. (2017). Occurrence, temporal variation, and estrogenic burden of five parabens in sewage sludge collected across the United States. Science of The Total Environment, 593, 368-374.

Rosen, B. H., Davis, T. W., Gobler, C. J., Kramer, B. J., & Loftin, K. A. (2017). Cyanobacteria of the 2016 Lake Okeechobee and Okeechobee Waterway harmful algal bloom (No. 2017-1054). US Geological Survey.

Price, R.E., and Giovannelli, D. 2017. A Review of the Geochemistry and Microbiology of Marine Shallow-Water Hydrothermal Vents, Reference Module in Earth Systems and Environmental Sciences, Elsevier, 2017. 30-May-17. doi: 10.1016/B978-0-12-409548-9.09523-3.

Yang, K., Davidson, R. A., Nozick, L. K., Blanton, B., & Colle, B. (2017). Scenario-Based Hazard Trees for Depicting Resolution of Hurricane Uncertainty over Time. Natural Hazards Review, 18(3), 04017001.

Brzezinski, M. A., Krause, J. W., Baines, S. B., Collier, J. L., & Ohnemus, D. C. (2017). Patterns and regulation of silicon accumulation in Synechococcus spp. Journal of Phycology.

Farhadzadeh, A. (2017). A study of Lake Erie seiche and low frequency water level fluctuations in the presence of surface ice. Ocean Engineering, 135, 117-136.

Rider, T. (2017). Review of Between Stony Brook Harbor Tides: The Natural History of a Long Island Pocket Bay by R. Lawrence Swanson and Malcolm J. Bowman. Long Island History Journal, Vol 26-1

Swanson, R. L., Wilson, R., Brownawell, B., & Willig, K. (2017). Environmental consequences of the flooding of the Bay Park Sewage Treatment Plant during Superstorm Sandy. Marine Pollution Bulletin.

Lee, C. S., & Fisher, N. S. (2017). Bioaccumulation of methylmercury in a marine copepod. Environmental toxicology and chemistry, 36(5), 1287-1293.

Mahmoudi, N., Beaupré, S. R., Steen, A. D., & Pearson, A. (2017). Sequential bioavailability of sedimentary organic matter to heterotrophic bacteria. Environmental Microbiology.

Narenpitak, P., Bretherton, C. S., & Khairoutdinov, M. F. (2017). Cloud and circulation feedbacks in a near‐global aquaplanet cloud‐resolving model. Journal of Advances in Modeling Earth Systems.

Krause, J. W., Brzezinski, M. A., Baines, S. B., Collier, J. L., Twining, B. S., & Ohnemus, D. C. (2017). Picoplankton contribution to biogenic silica stocks and production rates in the Sargasso Sea. Global Biogeochemical Cycles.

Jackson, L. J., Furman, B. T., & Peterson, B. J. (2017). Morphological response of Zostera marina reproductive shoots to fertilized porewater. Journal of Experimental Marine Biology and Ecology, 489, 1-6.

Aller, J. Y., Radway, J. C., Kilthau, W. P., Bothe, D. W., Wilson, T. W., Vaillancourt, R. D., … & Knopf, D. A. (2017). Size-resolved characterization of the polysaccharidic and proteinaceous components of sea spray aerosol. Atmospheric Environment, 154, 331-347.

Gobler, C. J., Doherty, O. M., Hattenrath-Lehmann, T. K., Griffith, A. W., Kang, Y., & Litaker, R. W. (2017). Ocean warming since 1982 has expanded the niche of toxic algal blooms in the North Atlantic and North Pacific oceans. Proceedings of the National Academy of Sciences, 201619575. doi:10.1073/pnas.1619575114

Farhadzadeh, A., Hashemi, M. R., & Neill, S. (2017). Characterizing the Great Lakes Hydrokinetic Renewable Energy Resource: Lake Erie Wave, Surge and Seiche Characteristics. Energy.

Suter, E. A., Scranton, M. I., Chow, S., Stinton, D., Medina Faull, L., & Taylor, G. T. (2017). Niskin bottle sample collection aliases microbial community composition and biogeochemical interpretation. Limnology and Oceanography, 62(2), 606-617.

Humphries, G. R. W., Naveen, R., Schwaller, M., Che-Castaldo, C., McDowall, P., Schrimpf, M., & Lynch, H. J. (2017). Mapping Application for Penguin Populations and Projected Dynamics (MAPPPD): data and tools for dynamic management and decision support. Polar Record, 1-7.

Zheng, M., Chang, E.K., Colle, B.A., Luo, Y. and Zhu, Y., 2017. Applying Fuzzy Clustering to a Multimodel Ensemble for US East Coast Winter Storms: Scenario Identification and Forecast Verification. Weather and Forecasting, 32(3), pp.881-903.

Riedinger N, Brunner B, Krastel S, Arnold GL, Wehrmann LM, Formolo MJ, Beck A, Bates SM, Henkel S, Kasten S and Lyons TW (2017) Sulfur cycling in an iron oxide-dominated, dynamic marine depositional system: The Argentine continental margin. Frontiers in Earth Sciences 5:33. doi:10.3389/feart.2017.00033

Farhadzadeh, A., & Gangai, J. (2017). Numerical Modeling of Coastal Storms for Ice-Free and Ice-Covered Lake Erie. Journal of Coastal Research.

Schmidt, S. K., Darcy, J. L., Sommers, P., Gunawan, E., Knelman, J. E., & Yager, K. (2017). Freeze–thaw revival of rotifers and algae in a desiccated, high-elevation (5500 meters) microbial mat, high Andes, Perú. Extremophiles, 1-8.

Roberts, K. J., Colle, B. A., & Korfe, N. (2017). Impact of Simulated Twenty-First-Century Changes in Extratropical Cyclones on Coastal Flooding at the Battery, New York City. Journal of Applied Meteorology and Climatology, 56(2), 415-432.

Painemal, D., Chiu, J. Y. C., Minnis, P., Yost, C., Zhou, X., Cadeddu, M., … & Kollias, P. (2017). Aerosol and cloud microphysics covariability in the northeast Pacific boundary layer estimated with ship‐based and satellite remote sensing observations. Journal of Geophysical Research: Atmospheres, 122(4), 2403-2418.

Cernadas-Martín S, Suter EA, Scranton MI, Astor Y, Taylor GT (2017) Aerobic and anaerobic ammonium oxidizers in the Cariaco Basin: distributions of major taxa and nitrogen species across the redoxcline. Aquat Microb Ecol 79:31-48. https://doi.org/10.3354/ame01817

Foley, C. M., Lynch, M. A., Thorne, L. H., & Lynch, H. J. (2017). Listing Foreign Species under the Endangered Species Act: A Primer for Conservation Biologists. BioScience, bix027.

Chen, J., Pycke, B. F., Brownawell, B. J., Kinney, C. A., Furlong, E. T., Kolpin, D. W., & Halden, R. U. (2017). Occurrence, temporal variation, and estrogenic burden of five parabens in sewage sludge collected across the United States. Science of The Total Environment, 593, 368-374.

Wolfe, C. L., Cessi, P., & Cornuelle, B. D. (2017). An Intrinsic Mode of Interannual Variability in the Indian Ocean. Journal of Physical Oceanography, 47(3), 701-719.

Kim, H. M., Zhou, Y., & Alexander, M. A. (2017). Changes in atmospheric rivers and moisture transport over the Northeast Pacific and western North America in response to ENSO diversity. Climate Dynamics, 1-14.

Xie, J., & Zhang, M. (2017). Role of internal atmospheric variability in the 2015 extreme winter climate over the North American continent. Geophysical Research Letters.

Liu, Q., Collier, J. L., & Allam, B. (2017). Seasonality of QPX disease in the Raritan Bay (NY) wild hard clam (Mercenaria mercenaria) population. Aquaculture Research, 48(3), 1269-1278.

Ma, C. G., & Chang, E. K. (2017). Impacts of storm track variations on winter time extreme weather events over the continental US. Journal of Climate, (2017).

China, S., Alpert, P. A., Zhang, B., Schum, S., Dzepina, K., Wright, K., … & Knopf, D. A. (2017). Ice cloud formation potential by free tropospheric particles from long‐range transport over the Northern Atlantic Ocean. Journal of Geophysical Research: Atmospheres.

Guo, Y., Shinoda, T., Lin, J., & Chang, E. K. (2017). Variations of Northern Hemisphere Storm Track and Extratropical Cyclone Activity Associated with the Madden-Julian Oscillation. Journal of Climate, (2017).

Wang, W. L., Lee, C., Cochran, J. K., Primeau, F. W., & Armstrong, R. A. (2017). A novel statistical analysis of chloropigment fluxes to constrain particle exchange and organic matter remineralization rate constants in the Mediterranean Sea. Marine Chemistry, 192, 49-58.

Dvarskas, A. (2017). Dynamically linking economic models to ecological condition for coastal zone management: Application to sustainable tourism planning. Journal of Environmental Management, 188, 163-172.

Yin, H., Zhu, Q., & Aller, R. C. (2017). An irreversible planar optical sensor for multi-dimensional measurements of sedimentary H 2 S. Marine Chemistry.

Herrington, A. R. and K. A. Reed (2017) An explanation for the sensitivity of the Community Atmosphere Model to horizontal resolution on aqua-planets. Journal of Climate. doi: 10.1175/JCLI-D-16-0069.1

Karatayev, A. Y., Burlakova, L. E., & Padilla, D. K. Can introduced species replace lost biodiversity? A test with freshwater molluscs. Hydrobiologia, 1-12.

Hattenrath-Lehmann, T. K., Ossiboff, R. J., Burnell, C. A., Rauschenberg, C. D., Hynes, K., Burke, R. L., … & Gobler, C. J. (2017). The role of a PSP-producing Alexandrium bloom in an unprecedented diamondback terrapin (Malaclemys terrapin) mortality event in Flanders Bay, New York, USA. Toxicon, 129, 36-43.

Tamborski, J. J., Cochran, J. K., & Bokuniewicz, H. J. (2017). Application of 224 Ra and 222 Rn for evaluating seawater residence times in a tidal subterranean estuary. Marine Chemistry. 189: 32–45.

Wehner, M. F., Reed, K. A., & Zarzycki, C. M. (2017). High-Resolution Multi-decadal Simulation of Tropical Cyclones. In Hurricanes and Climate Change (pp. 187-211). Springer International Publishing.

Kasina, M., Bock, S., Würdemann, H., Pudlo, D., Picard, A., Lichtschlag, A., März, C., Wagenknecht, L., Wehrmann, L.M., Vogt, C., Meister, P. (2017) Mineralogical and geochemical analysis of Fe-phases in drill-cores from the Triassic Stuttgart Formation at Ketzin CO2 storage site before CO2 arrival. Environ Earth Sci 76: 161. doi:10.1007/s12665-017-6460-9

McCoy, E., Borrett, S. R., LaPeyre, M. K., & Peterson, B. J. (2017). Estimating the impact of oyster restoration scenarios on transient fish production. Restoration Ecology.

Charnawskas, J. C., Alpert, P. A., Lambe, A., Berkemeier, T., O’Brien, R. E., Massoli, P., … Knopf, D.A. & Davidovits, P. (2017). Condensed-phase biogenic-anthropogenic interactions with implications for cold cloud formation. Faraday Discussions.

Martinez, C. M., Duplisea, D. E., Cerrato, R. M., & Frisk, M. G. (2017). Exploration of Trends in Interspecific Abundance-Occupancy Relationships Using Empirically Derived Simulated Communities. PloS one, 12(1), e0170816.

Colle, B. A., Naeger, A. R., & Molthan, A. (2017). Evolution of an Intense Warm Frontal Precipitation Band During the GPM Cold-Season Precipitation Experiment (GCPEx)

Slade, J. H., Shiraiwa, M., Arangio, A., Su, H., Pöschl, U., Wang, J., & Knopf, D. A. (2017). Cloud droplet activation through oxidation of organic aerosol influenced by temperature and particle phase state. Geophysical Research Letters.

Wang, J., Kim, H. M., & Chang, E. K. (2017). Changes in Northern Hemisphere Winter Storm Tracks under the Background of Arctic Amplification. Journal of Climate, (2017).

Rubin, E., Tanguy, A., Pales Espinosa, E., & Allam, B. (2017). Differential Gene Expression in Five Isolates of the Clam Pathogen, Quahog Parasite Unknown (QPX). Journal of Eukaryotic Microbiology.

Seimon TA, Seimon A, Yager K, Reider K, Delgado A, Sowell P, Tupayachi A, Konecky B, McAloose D, Halloy S. Long-term monitoring of tropical alpine habitat change, Andean anurans, and chytrid fungus in the Cordillera Vilcanota, Peru: Results from a decade of study. Ecology and Evolution;00:1–14

Scoccimarro, E., Fogli, P. G., Reed, K. A., Gualdi, S., Masina, S., & Navarra, A. (2017). Tropical Cyclone Interaction with the Ocean: The Role of High-Frequency (Subdaily) Coupled Processes. Journal of Climate, 30(1), 145-162.

Barrett, B. S., & Hameed, S. (2017). Seasonal Variability in Precipitation in Central and Southern Chile: Modulation by the South Pacific High. Journal of Climate, 30(1), 55-69.

Kim, O. Y., Kim, H. M., Lee, M. I., & Min, Y. M. (2017). Dynamical–statistical seasonal prediction for western North Pacific typhoons based on APCC multi-models. Climate Dynamics, 48(1-2), 71-88.

Pochron, S., Fiorenza, A., Sperl, C., Ledda, B., Patterson, C., Tucker, C., … & Panico, N. (2017). The response of earthworms (Eisenia fetida) and soil microbes to the crumb rubber material used in artificial turf fields. Chemosphere.

Ghate, V. P., & Kollias, P. (2016). On the controls of daytime precipitation in the Amazonian dry season. Journal of Hydrometeorology, 17(12), 3079-3097.

Rodellas, V., Garcia-Orellana, J., Trezzi, G., Masqué, P., Stieglitz, T.C., Bokuniewicz, H., Cochran, J.K. and Berdalet, E., (2017). Using the radium quartet to quantify submarine groundwater discharge and porewater exchange. Geochimica et Cosmochimica Acta, 196, pp.58-73.

Cao, L., Chen, Y., Dong, S., Hanson, A., Huang, B., Leadbitter, D., Little, D.C., Pikitch, E.K., Qiu, Y., de Mitcheson, Y.S. and Sumaila, U.R., 2017. Opportunity for marine fisheries reform in China. Proceedings of the National Academy of Sciences, 114(3), pp.435-442.

Feng, H., Qian, Y., Cochran, J.K., Zhu, Q., Hu, W., Yan, H., Li, L., Huang, X., Chu, Y.S., Liu, H., Yoo, S., & Liu, C.J., (2017) Nanoscale measurement of trace element distributions in Spartina alterniflora root tissue during dormancy, Scientific Reports, 7:40420.

Furman, B. T., Jackson, L. J., & Peterson, B. J. (2017). Edaphic resource foraging by Zostera marina (Linnaeus) patches. Journal of Experimental Marine Biology and Ecology, 486, 214-221.

Chang, E. K. (2017). Projected Significant Increase in the Number of Extreme Extratropical Cyclones in the Southern Hemisphere. Journal of Climate, (2017).

Morse, R. E., Friedland, K. D., Tommasi, D., Stock, C., & Nye, J. (2017). Distinct zooplankton regime shift patterns across ecoregions of the US Northeast continental shelf Large Marine Ecosystem. Journal of Marine Systems, 165, 77-91.

Jin, J., Zeng, Q., Wu, L., Liu, H., & Zhang, M. (2017). Formulation of a new ocean salinity boundary condition and impact on the simulated climate of an oceanic general circulation model. Science China Earth Sciences, 60(3), 491-500.

Flood, R. D., Violante, R. A., Gorgas, T., Schwarz, E., Grützner, J., Uenzelmann-Neben, G., … & St-Onge, G. (2017). IODP workshop: developing scientific drilling proposals for the Argentina Passive Volcanic Continental Margin (APVCM)–basin evolution, deep biosphere, hydrates, sediment dynamics and ocean evolution. Scientific Drilling, 22, 49.

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Madigan, D. J., Chiang, W. C., Wallsgrove, N. J., Popp, B. N., Kitagawa, T., Choy, C. A., … & Sun, C. L. (2016). Intrinsic tracers reveal recent foraging ecology of giant Pacific bluefin tuna at their primary spawning grounds. Marine Ecology Progress Series, 553, 253-266.

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Stubler, A. D., & Peterson, B. J. Ocean acidification accelerates net calcium carbonate loss in a coral rubble community. Coral Reefs, 1-9.

Chang, E. K., & Yau, A. M. (2016). Northern Hemisphere winter storm track trends since 1959 derived from multiple reanalysis datasets. Climate Dynamics, 47(5-6), 1435-1454.

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Knoll, K., Landman, N. H., Cochran, J. K., Macleod, K. G., & Sessa, J. A. (2016). Microstructural preservation and the effects of diagenesis on the carbon and oxygen isotope composition of Late Cretaceous aragonitic mollusks from the Gulf Coastal Plain and the Western Interior Seaway. American Journal of Science, 316(7), 591-613.

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Moffet, R. C., O’Brien, R. E., Alpert, P., Kelly, S. T., Pham, D. Q., Gilles, M. K., … & Laskin, A. Morphology and Mixing of BC Particles Collected in Central California During the CARES Field Study.

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Rodriguez-Mora, M. J., Edgcomb, V. P., Taylor, C., Scranton, M. I., Taylor, G. T., & Chistoserdov, A. Y. (2016). The diversity of sulfide oxidation and sulfate reduction genes expressed by the bacterial communities of the Cariaco Basin, Venezuela. The open microbiology journal, 10, 140.

Patton, E. G., Guenther, A. B., Shepson, P. B., Miller, D. O., Brune, W. H., Misztal, P. K., … & Mak, J. E. (2016). Understanding isoprene photooxidation using observations and modeling over a subtropical forest in the southeastern US. Atmospheric Chemistry and Physics, 16(12), 7725.

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Hu, Z., Wang, D. P., Pan, D., He, X., Miyazawa, Y., Bai, Y., … & Gong, F. (2016). Mapping surface tidal currents and Changjiang plume in the East China Sea from Geostationary Ocean Color Imager. Journal of Geophysical Research: Oceans.

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Madigan, D.J., Chiang, W.C., Wallsgrove, N.J., Popp, B.N., Kitagawa, T., Choy, C.A., Tallmon, J., Ahmed, N., Fisher, N.S. and Sun, C.L., (2016). Intrinsic tracers reveal recent foraging ecology of giant Pacific bluefin tuna at their primary spawning grounds. Marine Ecology Progress Series, 553, pp.253-266.

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Kim, H. M., Kim, D., Vitart, F., Toma, V. E., Kug, J. S., & Webster, P. J. (2016). MJO Propagation across the Maritime Continent in the ECMWF Ensemble Prediction System. Journal of Climate, 29(11), 3973-3988.

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Warren, J. D., Leach, T. H., & Williamson, C. E. (2016). Measuring the distribution, abundance, and biovolume of zooplankton in an oligotrophic freshwater lake with a 710 kHz scientific echosounder. Limnology and Oceanography: Methods.

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Pershing, A.J., Alexander, M.A., Hernandez, C.M., Kerr, L.A., Le Bris, A., Mills, K.E., Nye, J.A., Record, N.R., Scannell, H.A., Scott, J.D. and Sherwood, G.D., 2016. Response to Comments on “Slow adaptation in the face of rapid warming leads to collapse of the Gulf of Maine cod fishery”. Science, 352(6284), pp.423-423.

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Espinosa, E. P., Cerrato, R. M., Wikfors, G. H., & Allam, B. (2016). Modeling food choice in the two suspension-feeding bivalves, Crassostrea virginica and Mytilus edulis. Marine Biology, 163(2), 1-13.

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Cahill, A. E., & Levinton, J. S. (2016). Genetic differentiation and reduced genetic diversity at the northern range edge of two species with different dispersal modes. Molecular ecology, 25(2), 515-526.

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Hattenrath-Lehmann, T. K., Zhen, Y., Wallace, R. B., Tang, Y. Z., & Gobler, C. J. (2016). Mapping the distribution of cysts from the toxic dinoflagellate, Cochlodinium polykrikoides, in bloom-prone estuaries using a novel fluorescence in situ hybridization assay. Applied and environmental microbiology, 82 (4):1114-1125; 10.1128/AEM.03457-15 FEB 2016

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Li, Y., & Zhang, M. (2016). Cumulus over the Tibetan Plateau in the Summer Based on CloudSat-CALIPSO Data. Journal of Climate, 29 (3):1219-1230; 10.1175/JCLI-D-15-0492.1 FEB 2016.

Chapman, D. D., Feldheim, K.A., Papastamatiou, Y., Hueter, R.H. There and Back Again: A review of residency and return migrations in sharks, with implications for population structure and management. Annual Reviews in Marine Science (Available online in advance of publication).

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Espinosa, E. P., Koller, A., & Allam, B. (2016). Proteomic characterization of mucosal secretions in the eastern oyster, Crassostrea virginica. Journal of proteomics, 132, 63-76. DOI information: 10.1016/j.jprot.2015.11.018

Baines, S.B., X. Chen, S. Vogt, N.S. Fisher, B.S. Twining, and M.R. Landry. In press. Elemental content of single-celled plankton in the Costa Rica Upwelling Dome and mineral limitation of mesozooplankton. Journal of Plankton Research

Baines, S.B., X. Chen, B.S. Twining, N.S. Fisher, and M.R. Landry. In press. Factors affecting Fe and Zn contents of mesozooplankton from the Costa Rica Dome. Journal of Plankton Research

Martinez, C.M., F.J. Rohlf and M.G. Frisk (In Press). Sexual dimorphism in sister species of Leucoraja skate and its relationship to reproductive strategy and life history. Evolution & Development.

Li, H., & Colle, B. A. 2015: Future Changes in Convective Storm Days over the Northeastern United States Using Linear Discriminant Analysis Applied to CMIP5 Predictions. J. Climate. doi: http://dx.doi.org/10.1175/JCLI-D-14-00831.1.

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Dunton, K. J., Jordaan, A., Secor, D. H., Martinez, C. M., Kehler, T., Hattala, K. A., … & Frisk, M. G. (2016). Age and Growth of Atlantic Sturgeon in the New York Bight. North American Journal of Fisheries Management, 36(1), 62-73.

Trammell, J. H., Jiang, X., Li, L., Kao, A., Zhang, G. J., Chang, E. K., & Yung, Y. (2016). Temporal and Spatial Variability of Precipitation from Observation and Model. Journal of Climate, (2016).

Espinosa, E. P., Cerrato, R. M., Wikfors, G. H., & Allam, B. (2016). Modeling food choice in the two suspension-feeding bivalves, Crassostrea virginica and Mytilus edulis. Marine Biology, 163(2), 1-13.

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Wang, X. H., Wang, D. P., Sun, Z., He, Z., Liu, H., Guan, W., … & Bao, X. (2016). International scientists discuss impact on China’s estuarine and coastal environment by intensive anthropogenic activities–The 2nd workshop on sediment dynamics of muddy coasts and estuaries: Physics, biology and their interactions, Zhoushan, China, 23–26 October, 2015. Estuarine, Coastal and Shelf Science, 168, ii-iii.

Espinosa, E. P., Koller, A., & Allam, B. (2016). Proteomic characterization of mucosal secretions in the eastern oyster, Crassostrea virginica. Journal of proteomics, 132, 63-76.

Wang, K., Espinosa, E. P., Tanguy, A., & Allam, B. (2016). Alterations of the immune transcriptome in resistant and susceptible hard clams (Mercenaria mercenaria) in response to Quahog Parasite Unknown (QPX) and temperature. Fish & shellfish immunology, 49, 163-176.

Stubler, A. D., Stevens, A. K., & Peterson, B. J. (2016). Using community-wide recruitment and succession patterns to assess sediment stress on Jamaican coral reefs. Journal of Experimental Marine Biology and Ecology,474, 29-38.

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Allam, B., and Raftos, D., Immune responses to infectious diseases in bivalves, Journal of Invertebrate Pathology 131: 121-136, ISSN 0022-2011,http://dx.doi.org/10.1016/j.jip.2015.05.005.

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Khairoutdinov, M., & Zhou, X. (2015, April). Changes in sub-daily precipitation extremes in a global climate model with super-parameterization under CO2 warming. In EGU General Assembly Conference Abstracts (Vol. 17, p. 7931).

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Chao Ye, Weihua Qiao, Xiaobin Yu, Xiaojun Ji, He Huang, J. L. Collier, Liming Liu. 2015. Reconstruction and analysis of the genome-scale metabolic model ofschizochytrium limacinum SR21 for docosahexaenoic acid production. BMC Genomics 16 :799 (11pp). DOI 10.1186/s12864-015-2042-y

Mars Brisbin M, McElroy A, Pales Espinosa E, Allam B. 2015. Antimicrobial activity in the cuticle of the American lobster, Homarus americanus. Fish and Shellfish Immunology. 44: 542-546.

Lin, Yanluan Lin, Ming Zhao and Minghua Zhang, 2015: Tropical cyclone rainfall area controlled by relative sea surface temperature, Nature Communications 6, 6591m doi:10.1038/ncomms7591

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Walcker, R., E. J. Anthony, C. Cassou, R.C. Aller, A. Gardel, C. Proisy, J.-M. Martinez, and F. Fromard, 2015, Fluctuations in the extent of mangroves driven by multi-decadal changes in North Atlantic waves. J. Biogeogr., 42, 2209-2219.

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Robert Wood, Matthew Wyant, Christopher S. Bretherton, Jasmine Rémillard, Pavlos Kollias, Jennifer Fletcher, Jayson Stemmler, Simone de Szoeke, Sandra Yuter, Matthew Miller, David Mechem, George Tselioudis, J. Christine Chiu, Julian A. L. Mann, Ewan J. O’Connor, Robin J. Hogan, Xiquan Dong, Mark Miller, Virendra Ghate, Anne Jefferson, Qilong Min, Patrick Minnis, Rabindra Palikonda, Bruce Albrecht, Ed Luke, Cecile Hannay, and Yanluan Lin, (2015), Clouds, Aerosols, and Precipitation in the Marine Boundary Layer: An Arm Mobile Facility Deployment.Bull. Amer. Meteor. Soc., 96, 419–440. doi: http://dx.doi.org/10.1175/BAMS-D-13-00180.1

Chandra, A., Zhang, C., Kollias, P., Matrosov, S., and Szyrmer, W, (2015), Automated rain rate estimates using the Ka-band ARM zenith radar (KAZR), Atmos. Meas. Tech., 8, 3685-3699, doi:10.5194/amt-8-3685-2015.

Battaglia, A. and P. Kollias, (2015), Error Analysis of a Conceptual Cloud Doppler Stereoradar with Polarization Diversity for Better Understanding Space Applications. J. Atmos. Oceanic Technol., 32, 1298–1319. doi: http://dx.doi.org/10.1175/JTECH-D-14-00015.1

Maximilian Maahn, Ulrich Löhnert, Pavlos Kollias, Robert C. Jackson, and Greg M. McFarquhar, (2015), Developing and Evaluating Ice Cloud Parameterizations for Forward Modeling of Radar Moments Using in situ Aircraft Observations. J. Atmos. Oceanic Technol., 32, 880–903. doi: 10.1175/JTECH-D-14-00112.1

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Michael J McCann and Dianna K Padilla 2015. Effects of a patchy food environment across life history stages. Journal of Experimental Marine Biology and Ecology 472: 135-141.

Alexander Y. Karatayev, Demetrio Boltovskoy, Lyubov Burlakova and Dianna K. Padilla 2015. Parallels and contrasts between Limnoperna fortunei and species of Dreissena. In: Limnoperna fortunei: the ecology, distribution and control of a swiftly spreading invasive fouling mussel, Demetrio Boltovskoy, Editor. Springer.

Alexander Y. Karatayev, Lyubov E. Burlakova, Sergey E. Mastitsky, and Dianna K. Padilla 2015. Predicting the spread of aquatic invaders: insight from 200 years of invasion by zebra mussels. Ecological Applications 25: 430-440.

Alexander Y. Karatayev, Lyubov E. Burlakova and Dianna K. Padilla. 2015. Zebra versus quagga mussels: a review of their spread, population dynamics, and ecosystem impacts. Hydrobiologia 746: 97-112.

Chapman, D. D., Feldheim, K. A., Papastamatiou, Y. P., & Hueter, R. E. (2015). There and Back Again: A Review of Residency and Return Migrations in Sharks, with Implications for Population Structure and Management. Annual review of marine science, 7, 547-570.

Ashe, J. L., Feldheim, K. A., Fields, A. T., Reyier, E. A., Brooks, E. J., O’Connell, M. T., … & Chapman, D. D. (2015). Local population structure and context-dependent isolation by distance in a large coastal shark. Mar Ecol Prog Ser, 520, 203-216.

Watanabe, Y. Y., Goldman, K. J., Caselle, J. E., Chapman, D. D., & Papastamatiou, Y. P. (2015). Comparative analyses of animal-tracking data reveal ecological significance of endothermy in fishes. Proceedings of the National Academy of Sciences, 201500316.

Brooks, E. J., Brooks, A. M., Williams, S., Jordan, L. K., Abercrombie, D., Chapman, D. D., … & Grubbs, R. D. (2015). First description of deep-water elasmobranch assemblages in the Exuma Sound, The Bahamas. Deep Sea Research Part II: Topical Studies in Oceanography, 115, 81-91.

Fields, A. T., Feldheim, K. A., Poulakis, G. R., & Chapman, D. D. (2015). Facultative parthenogenesis in a critically endangered wild vertebrate. Current Biology, 25(11), R446-R447.

Tettelbach, S. T., B. J. Peterson, J. M. Carroll, B. T. Furman, S. W. T. Hughes, J. Havelin, J. R. Europe, D. M. Bonal, A. J. Weinstock and C. F. Smith. 2015. Aspiring to an Alternative Stable State: Rebuilding of Bay Scallop Populations and Fisheries Following Intensive Restoration. Marine Ecology Progress Series 529: 121-136.

Berry, D. L., J. A. Goleski, F. Koch, C. C. Wall, B. J. Peterson, O. R. Anderson and C. J. Gobler. 2015. Shifts in Cyanobacterial Strain Dominance during Onset of Harmful Algal Blooms in Florida Bay, USA. Molecular Ecology 70: 361-371.

Furman, B. T., L. J. Jackson, E. Bricker and B. J. Peterson. 2015. Sexual recruitment in Zostera marina: a patch to landscape-scale investigation. Limnology and Oceanography 60(2): 584-599.

Carroll, J. M., L. L. Jackson and B. J. Peterson. 2015. The effect of increasing habitat complexity on bay scallop survival in the presence of different decapod crustacean predators. Estuaries and Coasts 38: 1569-1579

Stubler, A. D., A. R. Duckworth and B. J. Peterson. 2015. Sedimentation affects sponge abundance, diversity and distribution on Jamaican coral reefs. Marine Pollution Bulletin 96: 261-270.

Stubler, A. D., B. T. Furman and B. J. Peterson. 2015. Sponge erosion under acidification and warming scenarios: differential impacts on living and dead coral. Global Change Biology 21(11): 4006-4020.

Furman, B. T. and B. J. Peterson. 2015. Sexual Recruitment in Zostera marina: Progress toward a Predictive Model. PLoS ONE 10(9): e0138206.

Trathan, P. N., P. García-Borboroglu, D. Boersma, C.-A. Bost, R. J. M. Crawford, G. T. Crossin, R. J. Cuthbert, P. Dann, L. S. Davis, S. De la Puente, U. Ellenberg, H.J. Lynch, T. Mattern, K. Pütz, P. J. Seddon, W. Trivelpiece, B. Wienecke. 2015. Assessing human impacts on marine systems, especially upon penguin species: how much do we care? Conservation Biology 29(1): 31-41.

Casanovas, P.V., R. Naveen, S. Forrest, J. Poncet, and H.J. Lynch. 2015. A comprehensive coastal seabird survey maps out the front lines of ecological change on the Western Antarctic Peninsula. Polar Biology 38: 927-940.

LaRue, M., G. Kooyman, H.J. Lynch, and P. Fretwell. 2015. Emigration in emperor penguins: Implications for interpretation of long-term studies. Ecography 38: 114-120.

Zhou, X., P. Kollias and E. Lewis, (2015), Clouds, Precipitation, and Marine Boundary Layer Structure during the MAGIC Field Campaign. J. Climate, 28, 2420–2442. doi: http://dx.doi.org/10.1175/JCLI-D-14-00320.1

Zermeno, D., C. Zhang, P. Kollias and H. Kalesse, (2015), Shallow Cloud Moistening in MJO and non-MJO Large-Scale Convective Events over the ARM Manus Site. J. Atmos. Sciences, doi: http://dx.doi.org/10.1175/JAS-D-14-0322.1

Lamer, K., P. Kollias, and L. Nuijens (2015), Observations of the variability of shallow trade wind cumulus cloudiness and mass flux. J. Geophys. Res. Atmos., 120, 6161–6178. doi: 10.1002/2014JD022950.

Marcus van Lier-Walqui, Ann Fridlind, Andrew Ackerman, Scott Collis, Jonathan Helmus, Donald MacGorman Kirk North, Pavlos Kollias and Derek Posselt, (2015), Polarimetric radar signatures of deep convection: characteristics of KDP columns observed during MC3E. Monthly Weather Review 2015; e-View doi: 10.1175/MWR-D-15-0100.1

Jiwen Fan, Yi-Chin Liu, Kuan-Man Xu, Kirk North, Scott Collis, Xiquan Dong, Guang J. Zhang, Qian Chen, Kollias Pavlos, and Steven J. Ghan, (2015), Improving Representation of Convective Transport for Scale-Aware Parameterization – Part I: Convection and Cloud Properties Simulated with Spectral-Bin and Bulk Microphysics. Accepted, Journal of Geophysical Research – Atmospheres

Kneifel, S., A.von Lerber, J. Tiira, D. Moisseev, P. Kollias, and J. Leinonen (2015), Observed relations between snowfall microphysics and triple-frequency radar measurements. J. Geophys. Res. Atmos., 120, 6034–6055. doi:10.1002/2015JD023156.

Jensen, M., et al., (2015), The Midlatitude Continental Convective Clouds Experiment (MC3E). Accepted to the Bulletin of the American Meteorological Society

Gownaris NJ, Pikitch EK, Ojwang WO, Michener R, Kaufman L (2015) Predicting Species’ Vulnerability in a Massively Perturbed System: The Fishes of Lake Turkana, Kenya. PLoS ONE 10(5): e0127027. doi:10.1371/journal.pone.0127027

Lin, W., Liu, Y., Vogelmann, A. M., Fridlind, A., Endo, S., Song, H., … & Zhang, M. (2015). RACORO Continental Boundary Layer Cloud Investigations. Part III: Separation of Parameterization Biases in Single‐Column Model CAM5 Simulations of Shallow Cumulus. Journal of Geophysical Research: Atmospheres.

Price, R. E., LaRowe, D. E., Italiano, F., Savov, I., Pichler, T., & Amend, J. P. (2015). Subsurface hydrothermal processes and the bioenergetics of chemolithoautotrophy at the shallow-sea vents off Panarea Island (Italy). Chemical Geology, 407, 21-45.

Engel, B.E; Hallock, P; Price, R.E.; and Pichler, T. (2015). Shell dissolution in larger benthic foraminifers exposed to pH and temperature extremes: Results from an in situ experiment. Journal of Foraminiferal Research. 45 (2).

Dasgupta, S., Huang, I.J., and McElroy A. E. 2015. Hypoxia enhances the toxicity of Corexit EC9500A and CEWAFs prepared with Louisiana Sweet Crude Oil (MD-242) to sheepshead minnow (Cyprinodon variegatus) larvae. PLoS One. DOI:10.1371/journal.pone.0128939.

Romany, J.S., McElroy A.E., and Fast, M. 2015. Measures of immune system status in young-of-the-year winter flounder (Pseudopleuronectes americanus) from Long Island coastal bays. J. Fish. Biol. 86:148-161.

K. Park*, L. K. Emmons, Z. Wang and J. E. Mak, Joint Application of Concentration and δ18O to Investigate the Global Atmospheric CO Budget, Atmosphere, 6, 547-578; doi:10.3390/atmos6050547, 2015.

K. Park*, Z. Wang, L. K. Emmons, J. E. Mak, Variation of atmospheric CO, δ13C and δ18O at high northern latitude during 2004-2009: observations and model simulations, J. Geophys.Res.-Atmos., 120, 11,024–11,036, doi:10.1002/2015JD023191, 2015.

P.K. Misztal et al., inc. J.E. Mak, Atmospheric benzenoid emissions from plants rival those from fossil fuel, Nature Sci. Rep., 5, 12064, 2015.

L. Su*, E. G. Patton, J. Vilà-Guerau de Arellano, A. B. Guenther, L. Kaser, B. Yuan, F. Xiong, P. B. Shepson, L. Zhang, D. O. Miller, W. H. Brune, K. Baumann, E. Edgerton, A. Weinheimer, and J. E. Mak, Understanding isoprene photo-oxidation using observations and modeling over a subtropical forest in the Southeast US, Atmos. Chem. Phys. Discuss., 15, 31621-31663, doi:10.5194/acpd-15-31621-2015, 2015.

Thalman, R., Baeza-Romero, M. T., Ball, S. M., Borrás, E., Daniels, M. J. S., Goodall, I. C. A., Henry, S. B., Karl, T., Keutsch, F. N., Kim, S., Mak, J., Monks, P. S., Muñoz, A., Orlando, J., Peppe, S., Rickard, A. R., Ródenas, M., Sánchez, P., Seco, R., Su, L., Tyndall, G., Vázquez, M., Vera, T., Waxman, E., and Volkamer, R.: Instrument intercomparison of glyoxal, methyl glyoxal and NO2 under simulated atmospheric conditions, Atmos. Meas. Tech., 8, 1835-1862, doi:10.5194/amt-8-1835-2015, 2015.

Yoo, C., S. Park, D. Kim, J. H. Yoon, and H. M. Kim, 2015: Boreal winter MJO teleconnection in the Community Atmosphere Model version 5 with the Unified Convection parameterization, J. Climate, 28, 8135-8150

Thorne, L. H., E. L. Hazen, S.J. Bograd, D.G. Foley, M.G. Conners, M.A. Kappes, H. M. Kim, Y. Tremblay, D.P. Costa, and S.A. Shaffer, 2015: Foraging behavior links climate variability and reproduction in North Pacific albatrosses, Movement Ecology, 3:27, DOI: 10.1186/s40462-015-0050-9

Yu, J. 2015 Erratum for “Approximations of the Dispersion Relationship of Water Waves” by J. Yu. J. Eng. Mech., 141(7) . doi: 10.1061/(ASCE)EM.1943-7889.0000941

Yu, J. and Chen, S. 2015 Hydrodynamic instability mechanism for rip currents. Studies in Applied Mathematics. 135: 196-223. doi: 10.1111/sapm.12074

Weidman, P., Herczynski, A., Yu, J. and Howard, L. N. 2015 Experiments on normal modes in a tank with corrugated bottom. J. Fluid Mech., 777: 122-150. doi:10.1017/jfm.2015.318

Carlisle AB, Goldman KJ, Litvin SY, Madigan DJ, Bigman JS, Swithenbank AM, Kline Jr TC & BA Block. 2015. Stable isotope analysis of salmon shark vertebrae reveals ontogenetic changes in habitat in a pelagic shark. Proceedings Royal Society B 282: 20141446.

Madigan DJ. 2015. Understanding bluefin migration using intrinsic tracers in tissues in T. Kitagawa & S. Kimura (Eds.), Biology & Ecology of Bluefin Tuna. Boca Raton, FL: CRC Press.

Carlisle AB, Litvin SY, Hazen EL, Madigan DJ, Goldman KJ, Lea RN & BA Block. 2015. Reconstructing habitat use by juvenile salmon sharks links upwelling to strandings in the California Current. Marine Ecology Progress Series 525: 217-228.

Lyons K, Preti A, Madigan DJ, Wells RJD, Blasius ME, Snodgrass OE, Kacev D, Harris JD, Dewar H, Kohin S, MacKenzie K & CG Lowe. 2015. Insights into the life history and ecology of a large shortfin mako shark (Isurus oxyrinchus) captured in southern California. Journal of Fish Biology. DOI:10.1111/jfb.12709.

Madigan DJ, Brooks EJ, Bond ME, Gelsleichter J, Howey LA, Abercrombie DL, Brooks A & DD Chapman. 2015. Diet shift and associated site-fidelity of oceanic whitetip sharks (Carcharhinus longimanus) along the edge of the Great Bahama Bank. Marine Ecology Progress Series 529: 185-197. DOI: 10.3354/meps11302.

Madigan DJ, Carlisle AB, Gardner LD, Jayasundara N, Micheli F, Schaefer KM, Fuller DW & BA Block. 2015. Assessing niche width of endothermic fish from genes to ecosystem. PNAS 112(27): 8350-8355.

Harris, C.M., K. Lorenz, L.D.C. Fishpool, B. Lascelles, J. Cooper, N. Coria, J.P. Croxall, L.M. Emmerson, R. Fijn, P. Jouventin, M.A. LaRue, Y. Le Maho, H.J. Lynch, R. Naveen, S. Poncet, R.A. Phillips, C.J. Southwell, J.A. van Franeker, H. Weimerskirch, B. Wienecke, and E.J. Woehler. 2015. Important Bird Areas in Antarctica Summary 2015. BirdLife International and Environmental Research & Assessment Ltd., Cambridge.

Rona, P., V. Guida, M.I. Scranton, D. Gong, L. Macelloni, M. Pierdomenico, A. Diercks, V. Asper, and S. Haag. 2015. Hudson submarine canyon head offshore New York and New Jersey: A physical and geochemical investigation of a fertile habitat space. Deep-Sea Research II, 121, 213-232. http://dx.doi.org/10.1016/j/dsr2.2015.07.019

Pierdomenico, M., V.G. Guida, L. Macelloni, F.L. Chiocci, P.A. Rona, M.I. Scranton, V. Asper and A. Diercks. 2015. Sedimentary facies, geomorphic features and habitat distribution at the Hudson Canyon head from AUV multibeam data. Deep-Sea Research II, 121, 112-125. http://dx.doi.org/10.1016/j.dsr2.2015.04.016.

Rodriguez-Mora, M, M.I. Scranton, G.T. Taylor, and A.Y. Chistoserdov. 2015. The dynamics of the bacterial diversity in the redox transition and anoxic zones of the Cariaco Basin assessed by parallel tag sequencing. FEMS Microbiology Ecology, 91(9), fiv088. doi:10.1093/femsec/fiv088.

Pershing, A. J., M. A. Alexander, C. M. Hernandez, L. A. Kerr, A. Le Bris, K. E. Mills, J. A. Nye, N. R. Record, H. A. Scannell, J. D. Scott, G. D. Sherwood, A. C. Thomas. (2015) Slow adaptation in the face of rapid warming leads to the collapse of an iconic fishery. Science 350 (6262): 809-812.

Tommasi, D., J.A. Nye, C. Stock, J. Hare, M. Alexander, K. Drew (2015) Effect of environmental conditions on river herring freshwater survival: a coastwide perspective. Canadian Journal of Fisheries and Aquatic Sciences 72(7): 1037-1047.

Levinton, J., Lord, S., Higeshide. 2015, Are crabs stressed for water on a hot sand flat? Water loss and field water state of two species of intertidal fiddler crabs. J. Exp. Mar. Biol. Ecol. 469: 57-62.

Sebastiano, D., Levinton, J., Doall, M., Kamath, S. 2015, Using a shellfish harvest strategy to extract high nitrogen inputs in coastal bays: Practical and economic implications. Journal of Shellfish Research, 34: 573-583.

Gillett, David, J., Stephan B. Weisberg, Treda Grayson, Anna Hamilton, Virginia Hansen, Erik W. Leppo, Marguerite C. Pelletier, Angel Borja, Donald Cadien, Daniel Dauer, Robert Diaz, Margaret Dutch, Jeffery L. Hyland, Michael Kellog, Peter Larsen, Jeffrey Levinton, Roberto Llansó, Lawrence L. Lovel, Paul Montagna, Dean Pasko, Charles A. Phillips, Chet Rakocinski, J. Ananda Ranasinghe, Denise M. Sanger, Heliana Teixeira, Robert F. Van Dolah, Ronald G. Velarde, and Kathy I. Welch. 2015, Effect of ecological group classification schemes on performance of the AMBI benthic index in US coastal waters Ecological Indicators, 50: 99-107.

Cahill, A. E. and Levinton, J. S. 2015, Genetic differentiation and reduced genetic diversity at the northern range edge of two species with different dispersal modes. Mol Ecol. Accepted Author Manuscript. doi:10.1111/mec.13497

Vogelmann, A. M., Fridlind, A. M., Toto, T., Endo, S., Lin, W., Wang, J., … Zhang, MH & Khairoutdinov, M. (2015). RACORO Continental Boundary Layer Cloud Investigations. Part I: Case Study Development and Ensemble Large‐Scale Forcings. Journal of Geophysical Research: Atmospheres.

Alfaro, D. A., & Khairoutdinov, M. (2015). Thermodynamic constraints on the morphology of simulated midlatitude squall lines. Journal of the Atmospheric Sciences, (2015).

Liu, P., Zhang, Q., Zhang, C., Zhu, Y., Khairoutdinov, M., Kim, H. M., … & Zhang, M. (2015). A Revised Real-Time Multivariate MJO Index. Monthly Weather Review, (2015).

Dheilly NM, Duval D, Mouahid G, Emans R, Allienne J-F, Genthon C, Dubois E, Du Pasquier L, Adema C, Grunau C, Mitta G, and Gourbal B. (2015). Diverse Immunoglobulin-like domain containing lectins in the snail Biomphalaria glabrata. Journal of Developmental and Comparative Immunology 48(1): 234-243

Dheilly NM, Maure F, Ravallec M, Galinier R, Doyon J, Duval D, Leger L, Volkoff A-N, Misse D, Nidelet S, Demolomb V, Brodeur J, Gourbal B, Thomas F, Mitta G. (2015). Who is the puppet master? Replication of a parasitic wasp-associated virus correlates with host behavior manipulation. Proceedings of the Royal Society B Biological Sciences 282(1803) http://rspb.royalsocietypublishing.org/content/282/1803/20142773

Harke, M. J., Davis, T. W., Watson, S. B., & Gobler, C. J. (2015). Nutrient-controlled niche differentiation of western Lake Erie cyanobacterial populations revealed via metatranscriptomic surveys. Environmental science & technology.

Rachel E O’Brien, Bingbing Wang, Alexander Laskin, Nicole Riemer, Matthew West, Qi Zhang, Yele Sun, Xiao‐Ying Yu, Peter Alpert, Daniel A Knopf, Mary K Gilles, Ryan C Moffet (2015). Chemical imaging of ambient aerosol particles: Observational constraints on mixing state parameterization. Journal of Geophysical Research: Atmospheres, 120(18), 9591-9605.

Andrea M. Arangio, Jonathan H. Slade, Thomas Berkemeier, Ulrich Pöschl, Daniel A. Knopf, Manabu Shiraiwa (2015). Multiphase Chemical Kinetics of OH Radical Uptake by Molecular Organic Markers of Biomass Burning Aerosols: Humidity and Temperature Dependence, Surface Reaction, and Bulk Diffusion, J. Phys. Chem. A, 119, 4533−4544.

Sessa, J. A., E. Larina, K. Knoll, M. Garb, J. K. Cochran, B. T. Huber, K. G. MacLeod, and N. H. Landman (2015) Ammonite habitat revealed via isotopic composition and comparisons with co-occurring benthic and planktonic organisms. Proceedings Nat. Acad. Sci. DOI 10.1073/pnas.1507554112.

Landman, N. H., J. C. Grier, J. W. Grier, J. K. Cochran, and S. M. Klofak (2015) 3-D orientation and distribution of ammonites in a concretion from the Upper Cretaceous Pierre Shale of Montana. Swiss J Palaeontol. DOI 10.1007/s13358-015-0084-z.

Cochran, J. K., N. H. Landman, N. L. Larson, K. C. Meehan, M. Garb, and J. Brezina (2015) Geochemical evidence (C and Sr isotopes) for methane seeps as ammonite habitats in the Late Cretaceous (Campanian) Western Interior Seaway. Swiss J Palaeontol. DOI 10.1007/s13358-015-0087-9.

Lamer, K., and P. Kollias (2015), Observations of fair-weather cumuli over land: Dynamical factors controlling cloud size and cover, Geophys. Res. Lett., 42, 8693–8701, doi:10.1002/2015GL064534

Lipton D., Lew D.K., Wallmo K., Wiley P.C., and Dvarskas A. (2015) The evolution of non-market valuation of U.S. Coastal and Marine Resources. Journal of Ocean and Coastal Economics. Article 6. Available at: http://cbe.miis.edu/joce/vol2014/iss1/6/.

Qian, Y., Feng, H., Gallagher, F. J., Zhu, Q., Wu, M., Liu, C.J., Jones, K.W., and Tappero, R.V. (2015). Synchrotron study of metal localozation in Typha latifolia L. root sections. Journal of Synchrotron Radiation. 22: 1459-1468.

Han J, McBean C, Wang L, Hoy J, Jaye C, Liu H, Li Z-Q, Sfeir M, Fischer D, Taylor G, Misewich J, Wong SS. 2015. Probing structure-induced optical behavior in a new class of self-activated luminescent 0D/1D CaWO4 metal oxide – CdSe nanocrystal composite heterostructures. Chem Materials 27: 778−792.

McParland, E, Benitez-Nelson CR, Taylor GT, Rollings A, Lorenzoni L. 2015. Cycling of suspended particulate phosphorus across the redoxcline of the Cariaco Basin. Mar. Chem. 176: 64-74.

Thorne, L. H., Hazen, E. L., Bograd, S. J., Foley, D. G., Conners, M. G., Kappes, M. A., … & Shaffer, S. A. (2015). Foraging behavior links climate variability and reproduction in North Pacific albatrosses. Movement Ecology, 3(1), 1-15.

Wehrmann, L.M., Titschack, J., Böttcher, M.E., and Ferdelman, T.G., 2015. Linking sedimentary sulfur and iron biogeochemistry to growth patterns of a cold-water coral mound in the Porcupine Basin, S.W. Ireland (IODP Expedition 307). Geobiology 13, 424-442.

Zhou, L., Zhang, M., Bao, Q., & Liu, Y. (2015). On the incident solar radiation in CMIP5 models. Geophysical Research Letters, 42(6), 1930-1935.

Tang, S., & Zhang, M. (2015). Three‐dimensional constrained variational analysis: Approach and application to analysis of atmospheric diabatic heating and derivative fields during an ARM SGP intensive observational period. Journal of Geophysical Research: Atmospheres.

Zhou, X-H, D-P. Wang, and D. Chen, 2015a. Global wavenumber spectrum with corrections for altimeter high-frequency noise. J. Phys. Oceanogr., 45(2), 495-503.

Xu, N., Tang, Y. Z., Qin, J., Duan, S., & Gobler, C. J. (2015). Ability of the marine diatoms Pseudo-nitzschia multiseries and P. pungens to inhibit the growth of co-occurring phytoplankton via allelopathy. Aquat Microb Ecol, 74, 29-41.

Park, B. S., Kim, J. H., Kim, J. H., Gobler, C. J., Baek, S. H., & Han, M. S. (2015). Dynamics of bacterial community structure during blooms of Cochlodinium polykrikoides (Gymnodiniales, Dinophyceae) in Korean coastal waters. Harmful Algae, 48, 44-54.

Hodell, D., Lorens., L., Crowhurst, S., Konijnendijk, T., Tjallingii, R., Jimenez-Espejo, F., Skinner, L., Tzedakis, P.C. and Shackelton Site Project Members (includes Flood, R.D.), 2015. A reference time scale for Site U1385 (Shackleton Site) on the SW Iberian Margin. Global and Planetary Change, 133, 49-64.

Goff, J.A., Flood, R.D., Austin., J.A., Jr., Schwab, W.C., Christensen, B., Browne, C.M., Denny, J.F. and Baldwin, W.E., 2015. The Impact of Hurricane Sandy on the Shoreface and Inner Shelf of Fire Island, New York: Large Bedform Migration and Limited Erosion. Continental Shelf Research, 98, 13-25.

Fritts, D. C., L. Wang, M. A. Geller, D. A. Lawrence, J. Werne, B. B. Balsley (2015), Numerical Modeling of Multi-Scale Dynamics at a High Reynolds Number: Instabilities, Turbulence, and an Assessment of Ozmidov and Thorpe Scales. J. Atmos. Sci., doi: http://dx.doi.org/10.1175/JAS-D-14-0343.1

Chennu, A., Volkenborn, N., de Beer, D., Wethey, D. S., Woodin, S. A., & Polerecky, L. (2015). Effects of Bioadvection by Arenicola marina on Microphytobenthos in Permeable Sediments. PLOS ONE, 10(7), e0134236.

Becker, K. N., & Warren, J. D. (2015). Material properties of Pacific hake, Humboldt squid, and two species of myctophids in the California Current. The Journal of the Acoustical Society of America, 137(5), 2522-2532.

Rountos, K. J., Frisk, M. G., & Pikitch, E. K. (2015) Are We Catching What They Eat? Moving Beyond Trends in the Mean Trophic Level of Catch. Fisheries, 40(8): 376-385.

Chow, J.S., C. Lee, A. Engel (2015). The influence of extracellular polysaccharides, growth rate, and free coccoliths on the coagulation efficiency of Emiliania huxleyi. Marine Chemistry, 175: 5-17, doi.org/10.1016/j.marchem.2015.04.010.

Cisternas Novoa, C., C. Lee, A. Engel (2015). Transparent exopolymer particles (TEP) and Coomassie stainable particles (CSP): Differences between their origin and vertical distributions in the ocean. Marine Chemistry, 175: 56-71, doi.org/10.1016/j.marchem.2015.03.009.

Slade, J. H., Thalman, R., Wang, J., & Knopf, D. A. (2015). Chemical aging of single and multicomponent biomass burning aerosol surrogate particles by OH: implications for cloud condensation nucleus activity. Atmos. Chem. Phys., 15, 10183–10201.

Hattenrath‐Lehmann, T., & Gobler, C. J. (2015). The contribution of inorganic and organic nutrients to the growth of a North American isolate of the mixotrophic dinoflagellate, Dinophysis acuminata. Limnology and Oceanography, 60(5), 1588-1603.

Baumann, H., Wallace, R.B., Tagliaferri, T., and Gobler, C.J. (2015). Large natural pH, CO2 and O2 fluctuations in a temperate tidal saltmarsh on diel, seasonal, and interannual time scales. Estuaries &Coasts. 38(1), 220-231. http://dx.doi.org/10.1007/s12237-014-9800-y

Tang, Y. Z., & Gobler, C. J. (2015). Sexual resting cyst production by the dinoflagellate Akashiwo sanguinea: a potential mechanism contributing toward the ubiquitous distribution of a harmful alga. Journal of Phycology.

DePasquale, E., Baumann, H., & Gobler, C. J. (2015). Vulnerability of early life stage Northwest Atlantic forage fish to ocean acidification and low oxygen. Marine Ecology Progress Series, 523, 145-156.

Malvezzi, A. J., Murray, C. S., Feldheim, K. A., DiBattista, J. D., Garant, D., Gobler, C. J., Chapman, D. D. … & Baumann, H. (2015). A quantitative genetic approach to assess the evolutionary potential of a coastal marine fish to ocean acidification.Evolutionary applications.

McElroy, A.E., Hice, L.A., Frisk, M.G., Purcell, S.L., Phillips, N.C., Fast, M.D. (2015) Spatial patterns in markers of contaminant exposure, glucose and glycogen metabolism, and immunological response in juvenile winter flounder (Pseudoplueronectes americanus). Comparative Biochemistry and Physiology D-Genomics & Proteomics 14, 53-65.

Cardinaud M, Dheilly NM, Huchette S, Moraga D, Paillard C. (2015). The early stages of the immune response of the European abalone Haliotis tuberculata to a Vibrio harveyi infection. Journal of Developmental and Comparative Immunology 51(2): 287-297 http://www.sciencedirect.com/science/article/pii/S0145305X15000427

Dheilly, N. M., Poulin, R., & Thomas, F. (2015). Biological warfare: Microorganisms as drivers of host–parasite interactions. Infection, Genetics and Evolution. DOI: 10.1016/j.meegid.2015.05.027 http://www.sciencedirect.com/science/article/pii/S1567134815001896

Zhang, Minghua (2015). Sea-level rise in New York in the 21st Century: Projection and methodology. New York State Resilience Institute for Storms and Emergencies (NYS RISE), NYS RISE Technical Report TR-0-15-01, 29 pp (available at http://nysrise.org/news/reports/).

Tang, S., & Zhang, M. (2015). Three‐dimensional constrained variational analysis: Approach and application to analysis of atmospheric diabatic heating and derivative fields during an ARM SGP intensive observational period. Journal of Geophysical Research: Atmospheres, 120(15), 7283-7299.

Xie, X., & Zhang, M. (2015). Scale‐aware parameterization of liquid cloud inhomogeneity and its impact on simulated climate in CESM. Journal of Geophysical Research: Atmospheres, 120(16), 8359-8371.

Wang, X., & Zhang, M. (2015). The coupling of mixed Rossby‐gravity waves with diabatic heating during the TRMM‐KWAJEX field campaign. Geophysical Research Letters, 42(19), 8241-8249.

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Wang K, Pales Espinosa E, Allam B. (2014). Effect of “heat shock” treatments on QPX disease in the hard clam, Mercenaria mercenaria. Journal of Shellfish Research 33(2): 661.

Wang K, Del Castillo C, Pales Espinosa E, Allam B. (2014). Clam focal and systemic immune responses to QPX revealed by RNA-Seq technology. Journal of Shellfish Research 33(2): 661.

Rubin E, Pales Espinosa E, Koller A, Allam B. (2014). Extracellular proteins in quahog parasite unknown (QPX) mucoid secretion. Journal of Shellfish Research 33(2): 648.

Rubin E, Tanguy A, Pales Espinosa E, Allam B. (2014). Differential gene expression in quahog parasite unknown (QPX) in response to clam factors and transcriptomic profiling of five QPX isolates. Journal of Shellfish Research 33(2): 647-648.

Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, et al. (2014). The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. PLoS Biology, 12(6), e1001889.

Rosa M, Ward E, Shumway S, Wikfors G, Pales Espinosa E, Allam B. (2014). Examining seasonal shifts in retention efficiency and mucosal composition in the blue mussel Mytilus edulis. Journal of Shellfish Research 33(2): 647.

Allam B., Corre E, Pales Espinosa E. (2014). Pallial mucus of Crassostrea virginica regulates the expression of putative virulence genes of its pathogen Perkinsus marinus. Journal of Shellfish Research 33(2): 586.

Allam, B., Pales Espinosa, E., Tanguy, A., Jeffroy, F., Le Bris, C., Paillard, C. 2014. Transcriptional changes in manila clam (Ruditapes philippinarum) in response to brown ring disease. Fish and Shellfish immunology. 41, 2-11.

Rubin E, Tanguy A, Perrigault M, Pales Espinosa E, Allam B. (2014). Characterization of the transcriptome and temperature-induced differential gene expression of in quahog parasite unknown QPX, the thraustochytrid parasite of hard clams. BMC Genomics 15: 245.

Pales Espinosa E, Koller T, Allam B. (2014). Shotgun proteomic characterization of the pallial mucus of the oyster Crassostrea virginica. Journal of Shellfish Research 33(2): 640.

Dahl S, Barnes D, Allam B. (2014). QPX disease relationships with environmental parameters monitored over a decade in a Raritan Bay (NY) hard clam fishery. Journal of Shellfish Research 33(2): 599-600.

Pales Espinosa E., Allam B. (2014). Food quality and season affect the expression of the mucosal lectin MeML and food sorting abilities in the blue mussel Mytilus edulis. Journal of Shellfish Research 33(2): 639-640.

Pales Espinosa E., Corre E, Allam B. (2014). Pallial mucus of Crassostrea virginica regulates the expression of putative virulence genes of its pathogen Perkinsus marinus. International Journal for Parasitology 44: 305-317.

Beaupré, S. R. (2014). Chapter 6: The isotopic composition of marine DOC, in Biogeochemistry of Marine Dissolved Organic Carbon, 2nd Edition, edited by D. A. Hansell and C. A. Carlson, pp. 335-368, Academic Press, U.K.

Geers, T.M., E.K. Pikitch, M.G. Frisk (In Press-online February 5, 2014). An Original Model of the Northern Gulf of Mexico using Ecopath with Ecosim and its Implications for the Effects of Fishing on Ecosystem Structure and Maturity. Deep Sea Research Part II: Topical Studies in Oceanography.

Newman, E. T. Biography of a Hacienda: Work and Revolution in Rural Mexico. 2014 University of Arizona Press.

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Taylor, D. (2013). The Log from the Sea of Cortez: A Poem Series. San Antonio, TX: Wings Press.

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2016 Publications

by | Jan 1, 2016

Allam, Bassem Liu, Q., Collier, J. L., & Allam, B. (2016). Seasonality of QPX disease in the Raritan Bay (NY) wild hard clam (Mercenaria mercenaria) population. Aquaculture Research. Aller, Josie Aller, Robert Beaupré, Steven Soulet, G., Skinner, L. C., Beaupré,...

2015 Publications

by | Jan 5, 2015

Allam, Bassem Wang, K., Espinosa, E. P., Tanguy, A., & Allam, B. (2015). Alterations of the immune transcriptome in resistant and susceptible hard clams (Mercenaria mercenaria) in response to Quahog Parasite Unknown (QPX) and temperature. Fish & Shellfish...

2014 Publications

by | Jan 10, 2014

Allam, Bassem Rubin, E., Espinosa, E. P., Koller, A., & Allam, B. (2014). Characterization of the secretome of the clam parasite, QPX. International Journal for Parasitology. Raghuvanshi, D. S., Kumari, K., Allam, B. K., & Singh, K. N. (2014). A convenient and...

2013 Publications

by | Jan 10, 2013

Allam, Bassem Allam B. , Carden WE, Ward JE, Ralph G, Winnicki S, Pales Espinosa E. (2013). Early host-pathogen interactions in marine bivalves: Evidence that the alveolate parasite Perkinsus marinus infects through the oyster mantle during rejection of pseudofeces....

2012 Publications

by | Jan 10, 2012

Allam, Bassem Allam B. 2012. Development of strategies to mitigate QPX disease in the hard clam Mercenaria mercenaria. Journal of Shellfish Research 31(1): 207-207. Sokolowski, M.S., B.A. Allam, K.J. Dunton, M.A. Clark, E.B. Kurtz and M.D.Fast. 2012. Immunophysiology...

2011 Publications

by | Jan 10, 2011

Allam, Bassem Rosa, M.E., J.E. Ward, S.E. Shumway, G.H. Wikfors, B.A. Holohan, E. Pales-Espinosa and B. Allam. 2011. The role of particle surface properties on feeding selectivity by Eastern oysters, Crassostrea virginica, and blue mussels, Mytilus edulis. Journal of...

2010 Publications

by | Jan 10, 2010

Allam, Bassem Pales Espinosa, E., M. Perrigault and B. Allam. 2010. Identification and molecular characterization of a mucosal lectin (MeML) from Mytilus edulis and its potential role in particle capture. Comparative Biochemistry and Physiology 156: 495-501....

2009 Publications

by | Jan 10, 2009

Allam, Bassem Perrigault M., A. Tanguy and B. Allam. 2009. Indentification and quantification of differentially expressed genes in the hard clam, Mercenaria mercenaria, in response to quahog parasite unknown (QPX). BMC Genomics 10: 377. doi:10.1186/1471-2164-10-377...

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