Publications

Peer-reviewed publications by SoMAS Faculty

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Tang, Y. Z., Ma, Z., Hu, Z., Deng, Y., Yang, A., Lin, S., … & Gobler, C. J. 3,000 km and 1,500‐year presence of Aureococcus anophagefferens reveals indigenous origin of brown tides in China. Molecular Ecology.

Ingram, E. C., Cerrato, R. M., Dunton, K. J., & Frisk, M. G. (2019). Endangered Atlantic Sturgeon in the New York Wind Energy Area: implications of future development in an offshore wind energy site. Scientific reports, 9(1), 1-13.

Ge, K., & Colle, B. A. (2019). Multi‐Decadal Historical Trends in Tropical Cyclone Intensity and Evolution Characteristics for Two North Atlantic Sub‐basins. Journal of Geophysical Research: Atmospheres.

Ge, K., & Colle, B. A. (2019). Multi‐Decadal Historical Trends in Tropical Cyclone Intensity and Evolution Characteristics for Two North Atlantic Sub‐basins. Journal of Geophysical Research: Atmospheres.

Wing, A. A., Camargo, S. J., Sobel, A. H., Kim, D., Moon, Y., Murakami, H., Reed, K. A. … & Zhao, M. (2019). Moist static energy budget analysis of tropical cyclone intensification in high-resolution climate models. Journal of Climate, 32(18), 6071-6095.

Dheilly, N. M., Ewald, P. W., Brindley, P. J., Fichorova, R. N., & Thomas, F. (2019). Parasite-microbe-host interactions and cancer risk. PLoS pathogens, 15(8), e1007912.

Li, C., Ding, S., Yang, L., Zhu, Q., Chen, M., Tsang, D. C., … & Zhang, C. (2019). Planar optode: A two-dimensional imaging technique for studying spatial-temporal dynamics of solutes in sediment and soil. Earth-Science Reviews, 102916.

Brunner, K., Rivas, D., & Lwiza, K. M. (2019). Application of classical coastal trapped wave theory to high scattering regions. Journal of Physical Oceanography, (2019).

Oh, S. B., Kollias, P., Lee, J. S., Lee, S. W., Lee, Y. H., & Jeong, J. H. Rain‐Rate Estimation Algorithm using Signal Attenuation of Ka‐band Cloud Radar. Meteorological Applications.

Shantharam, A. K., Padilla, D. K., Peterson, B. J., Doall, M., Lobue, C., & Webb, A. (2019). Macrofaunal Community Structure Following the Restocking of Northern Quahog (Mercenaria mercenaria) to Great South Bay, Long Island, NY. Journal of Shellfish Research, 38(2), 259-270.

Drueke, S., Kirshbaum, D. J., & Kollias, P. Evaluation of Shallow‐Cumulus Entrainment Rate Retrievals Using Large‐Eddy Simulation. Journal of Geophysical Research: Atmospheres.

Shi, R., Xu, S., Qi, Z., Zhu, Q., Huang, H., & Weber, F. (2019). Influence of suspended mariculture on vertical distribution profiles of bacteria in sediment from Daya Bay, Southern China. Marine Pollution Bulletin, 146, 816-826.

Zheng, X., Golaz, J. C., Xie, S., Tang, Q., Lin, W., Zhang, M., … & Roesler, E. L. (2019). The Summertime Precipitation Bias in E3SM Atmosphere Model Version 1 (EAMv1) over the Central United States. Journal of Geophysical Research: Atmospheres.

Chi, L., Wolfe, C. L., & Hameed, S. (2019). The Distinction Between the Gulf Stream and its North Wall. Geophysical Research Letters.

Laskin, A., Moffet, R. C., Fraund, M., Wang, J., Gilles, M. K., Knopf, D., & China, S. (2019). Chemical Imaging of Atmospheric Organic Particles in the Southern Great Plains Field Campaign Report (No. DOE/SC-ARM-19-018). DOE Office of Science Atmospheric Radiation Measurement (ARM) Program (United States).

Finn, D., Chandrasekhar, D., & Xiao, Y. (2019). A Region Recovers: Planning for Resilience after Superstorm Sandy. Journal of Planning Education and Research, 0739456X19864145.

Frossard, A. A., Gérard, V., Duplessis, P., Kinsey, J. D., Lu, X., Zhu, Y., … & Beaupré, S. R. (2019). Properties of Seawater Surfactants Associated with Primary Marine Aerosol Particles Produced by Bursting Bubbles at a Model Air–Sea Interface. Environmental science & technology.

Goldsmith, K. A., Lau, S., Poach, M. E., Sakowicz, G. P., Trice, T. M., Ono, C. R., Nye, J.A. … & Saba, G. K. (2019). Scientific considerations for acidification monitoring in the US Mid-Atlantic Region. Estuarine, Coastal and Shelf Science.

Aller, R. C., Aller, J. Y., Zhu, Q., Heilbrun, C., Klingensmith, I., & Kaushik, A. (2019). Worm tubes as conduits for the electrogenic microbial grid in marine sediments. Science Advances, 5(7), eaaw3651.

McDowall, P., & Lynch, H. J. (2019). When the “selfish herd” becomes the “frozen herd”: spatial dynamics and population persistence in a colonial seabird. Ecology.

Jimenez, M. Y., Ivany, L. C., Judd, E. J., & Henkes, G. (2019). Low and seasonally variable salinity in the Pennsylvanian equatorial Appalachian Basin. Earth and Planetary Science Letters, 519, 182-191.

Chavas, D. R., & Reed, K. A. (2019). Dynamical aquaplanet experiments with uniform thermal forcing: system dynamics and implications for tropical cyclone genesis and size. Journal of the Atmospheric Sciences, (2019).

Connelly, R., & Colle, B. A. (2019). Validation of Snow Multi-Bands in the Comma Head of an Extratropical Cyclone Using a 40-Member Ensemble. Weather and Forecasting, (2019).

Brunner, K., Rivas, D., & Lwiza, K. M. (2019). Application of classical coastal trapped wave theory to high scattering regions. Journal of Physical Oceanography, (2019).

Ko, H. C., Chun, H. Y., Wilson, R., & Geller, M. A. (2019). Characteristics of Atmospheric Turbulence Retrieved from High Vertical‐Resolution Radiosonde Data in the US. Journal of Geophysical Research: Atmospheres, 124(14), 7553-7579.

Bopp, J. J., Sclafani, M., Smith, D. R., McKown, K., Sysak, R., & Cerrato, R. M. (2019). Geographic-Specific Capture–Recapture Models Reveal Contrasting Migration and Survival Rates of Adult Horseshoe Crabs (Limulus polyphemus). Estuaries and Coasts, 1-16.

Olin, J. A., Cerrato, R. M., Nye, J. A., Sagarese, S. R., Sclafani, M., Zacharias, J. P., & Frisk, M. G. (2019). Evidence for Ecosystem Changes Within a Temperate Lagoon Following a Hurricane-Induced Barrier Island Breach. Estuaries and Coasts, 1-15.

Wang, S., McNamara, S. M., Moore, C. W., Obrist, D., Steffen, A., Shepson, P. B., … & Pratt, K. A. (2019). Direct detection of atmospheric atomic bromine leading to mercury and ozone depletion. Proceedings of the National Academy of Sciences, 116(29), 14479-14484.

Lucca, B. M., & Warren, J. D. (2019). Fishery-independent observations of Atlantic menhaden abundance in the coastal waters south of New York. Fisheries Research, 218, 229-236.

Hajny, K., Salmon, O. E., Rudek, J., Lyon, D. R., Stuff, A. A., Stirm, B. H., … & Shepson, P. B. (2019). Observations of Methane Emissions from Natural Gas-Fired Power Plants. Environmental Science & Technology.

Pinardi, N., Cessi, P., Borile, F., & Wolfe, C. L. (2019). The Mediterranean Sea Overturning Circulation. Journal of Physical Oceanography, 49(7), 1699-1721.

Battaglia, A., & Kollias, P. (2019). Evaluation of differential absorption radars in the 183 GHz band for profiling water vapour in ice clouds. Atmospheric Measurement Techniques, 12(6), 3335-3349.

Xie, S., Wang, Y. C., Lin, W., Ma, H. Y., Tang, Q., Tang, S., … & Zhang, M. (2019). Improved Diurnal Cycle of Precipitation in E3SM with a Revised Convective Triggering Function. Journal of Advances in Modeling Earth Systems.

Aller, R. C., & Cochran, J. K. (2019). The critical role of bioturbation for particle dynamics, priming potential, and organic C remineralization in marine sediments: local and basin scales. Frontiers in Earth Science, 7, 157.

Adamczak, S. K., Pabst, A., McLellan, W., & Thorne, L. (2019). Using 3D models to improve estimates of marine mammal size and external morphology. Frontiers in Marine Science, 6, 334.

Lynch, M. A., Youngflesh, C., Agha, N. H., Ottinger, M. A., & Lynch, H. J. (2019). Tourism and stress hormone measures in Gentoo Penguins on the Antarctic Peninsula. Polar Biology, 1-8.

Moffet, R. C., Wang, J., Laskin, A., Gilles, M. K., & Knopf, D. (2019). Chemical Imaging of Atmospheric Organic Particles in the Eastern North Atlantic Field Campaign Report (No. DOE/SC-ARM-19-013). DOE Office of Science Atmospheric Radiation Measurement (ARM) Program (United States).

McNamara, S. M., Raso, A. R., Wang, S., Thanekar, S., Boone, E. J., Kolesar, K. R., … Shepson, P. B. & Pratt, K. A. (2019). Springtime Nitrogen Oxide-Influenced Chlorine Chemistry in the Coastal Arctic. Environmental science & technology.

Sissmann, O., Price, R., Elvert, M., Heuer, V. B., Prieto, X., Monnin, C., … & Kohler, E. (2019). Abiogenic formation of H2, light hydrocarbons and other short-chain organic compounds within the serpentinite mud volcanoes of the Marianna Trench. In E3S Web of Conferences (Vol. 98, p. 02011). EDP Sciences.

Satoh, M., B. Stevens, F. Judt, M. Khairoutdinov, S.-J. Lin, W. Putman, and P. Duben (2019). Global Cloud-Resolving Models, Curr Clim Change Rep, https://doi.org/10.1007/s40641-019-00131-0

Griffith, A. W., Doherty, O. M., & Gobler, C. J. (2019). Ocean warming along temperate western boundaries of the Northern Hemisphere promotes an expansion of Cochlodinium polykrikoides blooms. Proceedings of the Royal Society B, 286(1904), 20190340.

Louca, S., Scranton, M. I., Taylor, G. T., Astor, Y. M., Crowe, S. A., & Doebeli, M. (2019). Circumventing kinetics in biogeochemical modeling. Proceedings of the National Academy of Sciences, 116(23), 11329-11338.

Bond, M. E., Valentin-Albanese, J., Babcock, E. A., Heithaus, M. R., Grubbs, R. D., Cerrato, R., Peterson B. J., Pikitch E. K., & Chapman, D. D. (2019). Top predators induce habitat shifts in prey within marine protected areas. Oecologia, 1-11.

Herrington, A. R., Lauritzen, P. H., Reed, K. A., Goldhaber, S., & Eaton, B. E. Exploring a Lower‐Resolution Physics Grid in CAM‐SE‐CSLAM. Journal of Advances in Modeling Earth Systems.

Bourdeau, P. E., & Padilla, D. K. (2019). Cue specificity of predator-induced phenotype in a marine snail: is a crab just a crab?. Marine Biology, 166(7), 84.

Lu, X., and S. R. Beaupré (2019), Optimized volume determinations and uncertainties for accurate and precise manometry, Radiocarbon, doi:10.1017/RDC.2019.43.

Dias, B. S., Frisk, M. G., & Jordaan, A. (2019). Opening the tap: Increased riverine connectivity strengthens marine food web pathways. PloS one, 14(5), e0217008.

Griffith, A. W., & Gobler, C. J. (2019). Harmful algal blooms: a climate change co-stressor in marine and freshwater ecosystems. Harmful Algae.

Zheng, M., Chang, E. K., & Colle, B. A. (2019). Evaluating US East Coast Winter Storms in a Multimodel Ensemble Using EOF and Clustering Approaches. Monthly Weather Review, 147(6), 1967-1987.

Collier, J. L., & Rest, J. S. (2019). Swimming, gliding, and rolling toward the mainstream: cell biology of marine protists. Molecular biology of the cell, 30(11), 1245-1248.

Buongiorno, J., Herbert, L.C., Wehrmann, L.M., Michaud, A.B., Laufer, K., Røy, H., Jørgensen, B.B., Szynkiewicz, A., Faiia, A., Yeager, K.M., Schindler, K. and Lloyd, K.G., 2019. Complex Microbial Communities Drive Iron and Sulfur Cycling in Arctic Fjord Sediments. Applied and Environmental Microbiology, 85(14): e00949-19.

Cochran, J. K., Bokuniewicz, H. J., & Yager, P. L. (2019). Encyclopedia of Ocean Sciences. Academic Press.

Cochran, J. K., Bokuniewicz, H. J., & Yager, P. L. (2019). Encyclopedia of Ocean Sciences. Academic Press.

Louca, S., Astor, Y. M., Doebeli, M., Taylor, G. T., & Scranton, M. I. (2019). Microbial metabolite fluxes in a model marine anoxic ecosystem. BioRxiv, 625087.

Zheng, C., & Chang, E. K. M. (2019). The Role of MJO Propagation, Lifetime, and Intensity on Modulating the Temporal Evolution of the MJO Extratropical Response. Journal of Geophysical Research: Atmospheres, 124(10), 5352-5378.

Lin, N., Marsooli, R., & Colle, B. A. (2019). Storm surge return levels induced by mid-to-late-twenty-first-century extratropical cyclones in the Northeastern United States. Climatic Change, 1-16.

Langendijk, G., Aubry-Wake, C., Osman, M., Gulizia, C., Attig-Bahar, F., Behrens, E., van der Linden, E. C., … & Reed, K. A.(2019). Three ways forwards to improve regional information for extreme events: an early career perspective. Frontiers in Environmental Science, 7, 6.

Rountos, K. J., Kim, J. J., Hattenrath-Lehmann, T. K., & Gobler, C. J. (2019). Effects of the harmful algae, Alexandrium catenella and Dinophysis acuminata, on the survival, growth, and swimming activity of early life stages of forage fish. Marine environmental research, 148, 46-56.

Goldsmith, K. A., Lau, S., Poach, M. E., Sakowicz, G. P., Trice, T. M., Ono, C. R., Nye, J.A. … & Saba, G. K. (2019). Scientific considerations for acidification monitoring in the US Mid-Atlantic Region. Estuarine, Coastal and Shelf Science.

Acquistapace, C., Löhnert, U., Maahn, M., & Kollias, P. (2019). A new criterion to improve operational drizzle detection with ground-based remote sensing. Journal of Atmospheric and Oceanic Technology, (2019).

Klein, J. A., Tucker, C. M., Nolin, A. W., Hopping, K. A., Reid, R. S., Steger, C., … & Boone, R. B. (2019). Catalyzing transformations to sustainability in the world’s mountains. Earth’s Future, 7(5), 547-557.

Slade, J. H., Ault, A. P., Bui, A., Ditto, J., Lei, Z., Bondy, A. L., … & Shepson, P.B. (2019). Bouncier Particles at Night: Biogenic Secondary Organic Aerosol Chemistry and Sulfate Drive Diel Variations in the Aerosol Phase in a Mixed Forest. Environmental science & technology.

Frisk, M. G., Shipley, O. N., Martinez, C. M., McKown, K. A., Zacharias, J. P., & Dunton, K. J. (2019). First Observations of Long‐Distance Migration in a Large Skate Species, the Winter Skate: Implications for Population Connectivity, Ecosystem Dynamics, and Management. Marine and Coastal Fisheries, 11(2), 202-212.

Levinton, J., & Doall, M. (2019). Feeding Access of Eastern Oysters to the Winter–Spring Phytoplankton Bloom: Evidence from Jamaica Bay, New York. Journal of Shellfish Research, 38(1), 115-121.

Walker, B. D., S. R. Beaupré, S. Griffin, and E. R. M. Druffel (2019). UV photochemical oxidation and extraction of marine dissolved organic carbon at UC Irvine: status, surprises, and methodological recommendations. Radiocarbon, 1-15, doi: 10.1017/rdc.2019.9

Wang, W. L., & Lee, C. (2019). A Bayesian statistical approach to inferring particle dynamics from in-situ pump POC and chloropigment data from the Mediterranean Sea. Marine Chemistry.

Hu, W., Liu, P., Zhang, Q., & He, B. (2019). Dominant patterns of winter-time intraseasonal surface air temperature over the CONUS in response to MJO convections. Climate Dynamics, 1-20.

Halfacre, J. W., Shepson, P. B., & Pratt, K. A. (2019). pH-dependent production of molecular chlorine, bromine, and iodine from frozen saline surfaces. Atmospheric Chemistry and Physics, 19(7), 4917-4931.

Rius, M., Rest, J., & Collier, J. (2019). Why does a heterotrophic marine protist produce carotenoids? Genetic approaches to investigate the ecophysiology of the thraustochytrid Aurantiochytrium limacinum. Access Microbiology, 1(1A).

Wakeham, S. G., & Lee, C. (2019). Limits of our knowledge, part 2: Selected frontiers in marine organic biogeochemistry. Marine Chemistry.

Raven, J. A., Gobler, C. J., & Hansen, P. J. (2019). Dynamic CO2 and pH levels in coastal, estuarine, and inland waters: Theoretical and observed effects on harmful algal blooms. Harmful Algae.

Griffith, A. W., Harke, M. J., DePasquale, E., Berry, D. L., & Gobler, C. J. (2019). The harmful algae, Cochlodinium polykrikoides and Aureococcus anophagefferens, elicit stronger transcriptomic and mortality response in larval bivalves (Argopecten irradians) than climate change stressors. Ecology and evolution.

Gobler, C. J., Young, C. S., Goleski, J., Stevens, A., Thickman, J., Wallace, R. B., … & Hattenrath-Lehmann, T. K. (2019). Accidental ecosystem restoration? Assessing the estuary-wide impacts of a new ocean inlet created by Hurricane Sandy. Estuarine, Coastal and Shelf Science.

McCartin, K., Jordaan, A., Sclafani, M., Cerrato, R., & Frisk, M. G. (2019). A New Paradigm in Alewife Migration: Oscillations between Spawning Grounds and Estuarine Habitats. Transactions of the American Fisheries Society.

Zheng, M., Chang, E. K., & Colle, B. A. (2019). Evaluating US East Coast Winter Storms in a Multi-Model Ensemble Using EOF and Clustering Approaches. Monthly Weather Review, (2019).

Oue, M., Kollias, P., Shapiro, A., Tatarevic, A., & Matsui, T. (2019). Investigation of observational error sources in multi-Doppler-radar three-dimensional variational vertical air motion retrievals. Atmospheric Measurement Techniques, 12(3), 1999-2018.

Seo, E., Lee, M. I., Jeong, J. H., Koster, R. D., Schubert, S. D., Kim, H. M., … & Scaife, A. A. (2019). Impact of soil moisture initialization on boreal summer subseasonal forecasts: mid-latitude surface air temperature and heat wave events. Climate Dynamics, 52(3-4), 1695-1709.

Zarzycki, C. M., Jablonowski, C., Kent, J., Lauritzen, P. H., Nair, R., Reed, K. A., … & Heikes, R. (2019). DCMIP2016: the splitting supercell test case. Geoscientific Model Development, 12, 879-892.

Pochron, S., Choudhury, M., Gomez, R., Hussaini, S., Illuzzi, K., Mann, M., Mezic, M., Nikakis, J. & Tucker, C. (2019). Temperature and body mass drive earthworm (Eisenia fetida) sensitivity to a popular glyphosate-based herbicide. Applied Soil Ecology.

Portet, A., Pinaud, S., Chaparro, C., Galinier, R., Dheilly, N. M., Portela, J., … & Gourbal, B. (2019). Sympatric versus allopatric evolutionary contexts shape differential immune response in Biomphalaria/Schistosoma interaction. PLoS pathogens, 15(3), e1007647.

Cooper, D. J., Sueltenfuss, J., Oyague, E., Yager, K., Slayback, D., Caballero, E. M. C., … & Mark, B. G. Drivers of Peatland Water Table Dynamics in the Central Andes, Bolivia and Peru. Hydrological Processes.

Moriceau B, Gehlen M, Tréguer P, Baines S, Livage J and André L (2019) Editorial: Biogeochemistry and Genomics of Silicification and Silicifiers. Front. Mar. Sci. 6:57. doi: 10.3389/fmars.2019.00057

Orton, P. , Lin, N. , Gornitz, V. , Colle, B. , Booth, J. , Feng, K. , Buchanan, M. , Oppenheimer, M. and Patrick, L. (2019), New York City Panel on Climate Change 2019 Report Chapter 4: Coastal Flooding. Ann. N.Y. Acad. Sci., 1439: 95-114. doi:10.1111/nyas.14011

González, J. E., Ortiz, L. , Smith, B. K., Devineni, N. , Colle, B. , Booth, J. F., Ravindranath, A. , Rivera, L. , Horton, R. , Towey, K. , Kushnir, Y. , Manley, D. , Bader, D. and Rosenzweig, C. (2019), New York City Panel on Climate Change 2019 Report Chapter 2: New Methods for Assessing Extreme Temperatures, Heavy Downpours, and Drought. Ann. N.Y. Acad. Sci., 1439: 30-70. doi:10.1111/nyas.14007

Lee, C. S., & Fisher, N. S. (2019). Microbial generation of elemental mercury from dissolved methylmercury in seawater. Limnology and Oceanography, 64(2), 679-693.

Durán-Toro, V. M., Price, R. E., Maas, M., Brombach, C. C., Pichler, T., Rezwan, K., & Bühring, S. I. (2019). Amorphous arsenic sulfide nanoparticles in a shallow water hydrothermal system. Marine Chemistry.

Beaupré, S.R. (2019) Radiocarbon-based insights into the biogeochemical cycles of marine dissolved and particulate organic carbon. Encyclopedia of Ocean Sciences, eds Cochran J.K., Bokuniewicz H., & Yager P. (Academic Press), 3rd Ed. DOI: 10.1016/B978-0-12-409548-9.09522-1

Thorne, L. H., Baird, R. W., Webster, D. L., Stepanuk, J. E., & Read, A. J. (2019). Predicting fisheries bycatch: A case study and field test for pilot whales in a pelagic longline fishery. Diversity and Distributions.

Velioglu Sogut, D., Jensen, R. E., & Farhadzadeh, A. (2019). Characterizing Lake Ontario Marine Renewable Energy Resources. Marine Technology Society Journal, 53(2), 21-37.

Rosani, U., Shapiro, M., Venier, P., & Allam, B. (2019). A Needle in A Haystack: Tracing Bivalve-Associated Viruses in High-Throughput Transcriptomic Data. Viruses, 11(3), 205.

Huang, I. J., Sirotkin, H. I., & McElroy, A. E. (2019). Varying the exposure period and duration of neuroactive pharmaceuticals and their metabolites modulates effects on the visual motor response in zebrafish (Danio rerio) larvae. Neurotoxicology and teratology.

Thomas, D. M., & Fisher, N. S. (2019). Evaluation of body size and temperature on 137Cs uptake in marine animals. Journal of environmental radioactivity, 202, 25-31.

Tang, S., Xie, S., Zhang, M., Tang, Q., Zhang, Y., Klein, S. A., … & Sullivan, R. C. (2019). Differences in Eddy‐Correlation and Energy‐Balance Surface Turbulent Heat Flux Measurements and Their Impacts on the Large‐Scale Forcing Fields at the ARM SGP Site. Journal of Geophysical Research: Atmospheres.

Tang, S., Xie, S., Zhang, M., Tang, Q., Zhang, Y., Klein, S. A., … & Sullivan, R. C. (2019). Differences in eddy‐correlation and energy‐balance surface turbulent heat flux measurements and their impacts on the large‐scale forcing fields at the ARM SGP site. Journal of Geophysical Research: Atmospheres.

Klein, J. A., C. M. Tucker, C. Steger, A. Nolin, R. Reid, K. A. Hopping, E. T. Yeh, M. S. Pradhan, A. Taber, D. Molden, R. Ghate, D. Choudhury, I. Alcántara-Ayala, S. Lavorel, B. Müller, A. Grêt-Regamey, R. B. Boone, P. Bourgeron, E. Castellanos, X. Chen, S. Dong, M. Keiler, R. Seidl, J. Thorn, K. Yager. 2019. An integrated community and ecosystem-based approach to disaster risk reduction in mountain systems. Environmental Science and Policy. 94:143-152. https://doi.org/10.1016/j.envsci.2018.12.034

Yager, K., Valdivia, C., Slayback, D., Jimenez, E., Meneses, R.I., Palabral, A., Bracho, M., Romero, D., Hubbard, A., Pacheco, P., Calle, A., Alberto, H., Yana, O., Ulloa, D., Zeballos, G., Romero, A. 2019. Socio-ecological dimensions of Andean pastoral landscape change: Bridging traditional ecological knowledge and satellite image analysis in Sajama National Park, Bolivia. Regional Environmental Change. https://doi.org/10.1007/s10113-019-01466-y

Hahn, M. A., & Dheilly, N. M. (2019). Genome characterization, prevalence and transmission mode of a novel picornavirus associated with the Threespine Stickleback fish (Gasterosteus aculeatus). Journal of virology, JVI-02277.

Yang, K., Davidson, R. A., Blanton, B., Colle, B., Dresback, K., Kolar, R., … & Wachtendorf, T. (2019). Hurricane evacuations in the face of uncertainty: Use of integrated models to support robust, adaptive, and repeated decision-making. International Journal of Disaster Risk Reduction, 101093.

Ghate, V. P., Kollias, P., Crewell, S., Fridlind, A. M., Heus, T., Löehnert, U., … & Wendisch, M. (2018). The Second ARM Training and Science Application Event: Training the Next Generation of Atmospheric Scientists. Bulletin of the American Meteorological Society, (2018).

Wolfe, C. L., Hameed, S., & Chi, L. (2019). On the Drivers of Decadal Variability of the Gulf Stream North Wall. Journal of Climate, (2018).

Carroll, J. M., Furman, B. T., Jackson, L. J., Hunter, E. A., & Peterson, B. J. Propagule risk in a marine foundation species: seascape effects on Zostera marina seed predation. Journal of Ecology.

Ziegler, C. M., & Frisk, M. G. (2019). Flatfish utilize sediment blanket to facilitate thermoregulation. Marine Ecology Progress Series, 609, 179-186.

Jankowiak, J., Hattenrath‐Lehmann, T., Kramer, B. J., Ladds, M., & Gobler, C. J. (2019). Deciphering the effects of nitrogen, phosphorus, and temperature on cyanobacterial bloom intensification, diversity, and toxicity in western Lake Erie. Limnology and Oceanography.

Wurch, L., Alexander, H., Frischkorn, K. R., Haley, S., Gobler, C., & Dyhrman, S. (2019). Transcriptional shifts highlight the role of nutrients in harmful brown tide dynamics. Frontiers in Microbiology, 10, 136.

Bohorquez, J. J., Dvarskas, A., & Pikitch, E. (2019). Filling the data gap-a pressing need for advancing MPA sustainable finance. Frontiers in Marine Science, 6, 45.

Ren, X., Hall, D. L., Vinciguerra, T., Benish, S. E., Stratton, P. R., Ahn, D., Shepson, P. B., et al. (2019). Methane emissions from the Marcellus Shale in Southwestern Pennsylvania and northern West Virginia based on airborne measurements. Journal of Geophysical Research: Atmospheres, 124, 1862–1878.  https://doi.org/10.1029/2018JD029690

Iqbal, M. J., Rehman, S. U., Hameed, S., & Qureshi, M. A. (2019). Changes in Hadley circulation: the Azores high and winter precipitation over tropical northeast Africa. Theoretical and Applied Climatology, 1-8.

Zhu, J., Zhang, M., & Zeng, X. (2018). Linkage between tropical terrestrial carbon cycle and precipitation: The two anomalous years of 1979 and 1996. Atmospheric Science Letters, e876.

Gao, J., & Munch, S. B. (2019). A function‐valued trait approach to estimating the genetic basis of size at age and its potential role in fisheries‐induced evolution. Evolutionary Applications.

Griffith, A. W., Shumway, S. E., & Gobler, C. J. (2019). Differential Mortality of North Atlantic Bivalve Molluscs During Harmful Algal Blooms Caused by the Dinoflagellate, Cochlodinium (aka Margalefidinium) polykrikoides. Estuaries and Coasts, 42(1), 190-203.

Yang, K., Davidson, R. A., Vergara, H., Kolar, R. L., Dresback, K. M., Colle, B. A., … & Nozick, L. K. (2019). Incorporating inland flooding into hurricane evacuation decision support modeling. Natural Hazards, 1-22.

Reed, K. A., Bacmeister, J. T., Huff, J. J. A., Wu, X., Bates, S. C., & Rosenbloom, N. A. (2019). Exploring the impact of dust on North Atlantic hurricanes in a high‐resolution climate model. Geophysical Research Letters.

Chia, M. A., Kramer, B. J., Jankowiak, J. G., Bittencourt-Oliveira, M. D. C., & Gobler, C. J. (2019). The Individual and Combined Effects of the Cyanotoxins, Anatoxin-a and Microcystin-LR, on the Growth, Toxin Production, and Nitrogen Fixation of Prokaryotic and Eukaryotic Algae. Toxins, 11(1), 43.

Reed, K. A., Bacmeister, J. T., Huff, J. J. A., Wu, X., Bates, S. C., & Rosenbloom, N. A. (2019). Exploring the impact of dust on North Atlantic hurricanes in a high‐resolution climate model. Geophysical Research Letters.

Padilla, D. K., Charifson, D., Liguori, A., McCarty-Glenn, M., Rosa, M., & Rugila, A. (2018). Factors Affecting Gastropod Larval Development and Performance: A Systematic Review. Journal of Shellfish Research, 37(4), 851-867.

Muller-Karger F, Astor Y, Benitez-Nelson C, Buck K, Fanning K, Lorenzoni L, Montes E, Scranton M, Rueda-Roa D, Taylor G, Thunell R, Tappa E, Varela R. (2019). Scientific legacy of the CARIACO oceanographic time-series program. Annual Review of Marine Sciences 11:413–37.

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Donaton, J., Durham, K., Cerrato, R., Schwerzmann, J., & Thorne, L. H. (2019). Long-term changes in loggerhead sea turtle diet indicate shifts in the benthic community associated with warming temperatures. Estuarine, Coastal and Shelf Science.

Shipley, O. N., Lee, C. S., Fisher, N. S., Burruss, G., Frisk, M. G., Brooks, E. J., … & Madigan, D. J. (2019). Trophodynamics and mercury bioaccumulation in reef and open-ocean fishes from The Bahamas with a focus on two teleost predators. Marine Ecology Progress Series, 608, 221-232.

Xie, J., Zhang, M., & Liu, H. (2019). Role of Arctic sea ice in the 2014–15 Eurasian warm winter. Geophysical Research Letters.

Shipley, O. N., Olin, J. A., Power, M., Cerrato, R. M., & Frisk, M. G. (2018). Questioning assumptions of trophic behavior in a broadly ranging marine predator guild. Ecography.

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Zhang, T., Zhang, M., Lin, W., Lin, Y., Xue, W., Yu, H., … & Zheng, W. (2018). Automatic tuning of the Community Atmospheric Model (CAM5) by using short-term hindcasts with an improved downhill simplex optimization method. Geoscientific Model Development, 11(12), 5189-5201.

Milligan, R. J., Bernard, A. M., Boswell, K. M., Bracken-Grissom, H. D., D’Elia, M. A., deRada, S., … & Hu, C. (2018). The Application of Novel Research Technologies by the Deep Pelagic Nekton Dynamics of the Gulf of Mexico (DEEPEND) Consortium. Marine Technology Society Journal, 52(6), 81-86.

Fuirst, M., Veit, R. R., Hahn, M., Dheilly, N., & Thorne, L. H. (2018). Effects of urbanization on the foraging ecology and microbiota of the generalist seabird Larus argentatus. PloS one, 13(12), e0209200.

Herrington, A. R., Lauritzen, P. H., Taylor, M. A., Goldhaber, S., Eaton, B. E., Bacmeister, J. T., … & Ullrich, P. A. (2019). Physics–Dynamics Coupling with Element-Based High-Order Galerkin Methods: Quasi-Equal-Area Physics Grid. Monthly Weather Review, 147(1), 69-84.

Herrington, A. R., Lauritzen, P. H., Taylor, M. A., Goldhaber, S., Eaton, B. E., Bacmeister, J. T., … & Ullrich, P. A. (2018). Physics-dynamics coupling with element-based high-order Galerkin methods: quasi equal-area physics grid. Monthly Weather Review, (2018).

O’Leary, C. A., Miller, T. J., Thorson, J. T., & Nye, J. A. (2018). Understanding historical Summer Flounder (Paralichthys dentatus) abundance patterns through the incorporation of oceanography-dependent vital rates in Bayesian hierarchical models. Canadian Journal of Fisheries and Aquatic Sciences, (ja).

Frassoni, A., Castilho, D., Rixen, M., Ramirez, E., de Mattos, J. G. Z., Kubota, P., … & de Campos Velho, H. F. (2018). Building the Next Generation of Climate Modelers: Scale-Aware Physics Parameterization and the “Grey Zone” Challenge. Bulletin of the American Meteorological Society, 99(11), ES185-ES189.

Cisternas Novoa, C., Lee, C., Tang, T., de Jesus, R., & Engel, A. (2018). Effects of higher CO2 and temperature on exopolymer particle content and physical properties of marine aggregates. Frontiers in Marine Science, 5, 500.

Zheng, G., Wang, Y., Aiken, A. C., Gallo, F., Jensen, M. P., Kollias, P., … & Wood, R. (2018). Marine boundary layer aerosol in the eastern North Atlantic: seasonal variations and key controlling processes. Atmospheric Chemistry and Physics, 18(23), 17615-17635.

Tomasetti S.J., Morrell B.K., Merlo L.R., Gobler C.J. (2018). Individual and combined effects of low dissolved oxygen and low pH on survival of early stage larval blue crabs, Callinectes sapidus. PLoS ONE 13(12): e0208629. https://doi.org/10.1371/journal.pone.0208629

Khairoutdinov, M. F., & Emanuel, K. (2018). Intraseasonal Variability in a Cloud-Permitting Near-Global Equatorial Aquaplanet Model. Journal of the Atmospheric Sciences, 75(12), 4337-4355.

Siskey, M. R., Shipley, O. N., & Frisk, M. G. Skating on thin ice: Identifying the need for species‐specific data and defined migration ecology of Rajidae spp. Fish and Fisheries.

Parishani, H., Pritchard, M. S., Bretherton, C. S., Terai, C. R., Wyant, M. C., Khairoutdinov, M., & Singh, B. Insensitivity of the cloud response to surface warming under radical changes to boundary layer turbulence and cloud microphysics: Results from the UltraParameterized CAM. Journal of Advances in Modeling Earth Systems.

Dvarskas, A. (2018). Experimental ecosystem accounting for coastal and marine areas: A pilot application of the SEEA-EEA in Long Island coastal bays. Marine Policy.

Robledo, J. A. F., Yadavalli, R., Allam, B., Pales-Espinosa, E., Gerdol, M., Greco, S., … & Tracy, A. N. (2018). From the raw bar to the bench: Bivalves as models for human health. Developmental & Comparative Immunology.

Bire, S., & Wolfe, C. L. (2018). The role of eddies in buoyancy-driven eastern boundary currents. Journal of Physical Oceanography, (2018).

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Kim, H., F. Vitart, and D.E. Waliser, 2018: Prediction of the Madden–Julian Oscillation: A Review. J. Climate, 31, 9425–9443, https://doi.org/10.1175/JCLI-D-18-0210.1

Ziegler, C. M., Zacharias, J. P., & Frisk, M. G. (2018). Migration diversity, spawning behavior and habitat utilization of Winter Flounder. Canadian Journal of Fisheries and Aquatic Sciences, (ja).

Borque, P., Luke, E. P., Kollias, P., & Yang, F. (2018). Relationship Between Turbulence and Drizzle in Continental and Marine Low Stratiform Clouds. Journal of the Atmospheric Sciences, 75(12), 4139-4148.

Humphries, G. R. W., Che-Castaldo, C., Bull, P. J., Lipstein, G., Ravia, A., Carrión, B., … & Lynch, H. J. (2018). Predicting the future is hard and other lessons from a population time series data science competition. Ecological Informatics, 48, 1-11.

Schultz, D. M., Bosart, L. F., Colle, B. A., Davies, H. C., Dearden, C., Keyser, D., … & Winters, A. C. (2018). Extratropical Cyclones: A Century Of Research On Meteorology’s Centerpiece. Meteorological Monographs.

Taylor, G. T., Suter, E. A., Pachiadaki, M. G., Astor, Y., Edgcomb, V. P., & Scranton, M. I. (2017). Temporal shifts in dominant sulfur-oxidizing chemoautotrophic populations across the Cariaco Basin’s redoxcline. Deep Sea Research Part II: Topical Studies in Oceanography.

Chandrasekhar, D., Xiao, Y., Rothfeder, R. and Finn, D. (2018). What drives household recovery after disasters? A case study of New York City after 2012 Hurricane Sandy. Journal of Environmental Planning and Management. https://doi.org/10.1080/09640568.2018.1492907

Zhou, Y., Kim, H., & Guan, B. (2018). Life Cycle of Atmospheric Rivers: Identification and Climatological Characteristics. Journal of Geophysical Research: Atmospheres.

Young, C. S., & Gobler, C. J. (2018). The ability of macroalgae to mitigate the negative effects of ocean acidification on four species of North Atlantic bivalve. Biogeosciences, 15(20), 6167-6183.

Kollias, P., Battaglia, A., Tatarevic, A., Lamer, K., Tridon, F., & Pfitzenmaier, L. (2018, October). The EarthCARE cloud profiling radar (CPR) doppler measurements in deep convection: challenges, post-processing, and science applications. In Remote Sensing of the Atmosphere, Clouds, and Precipitation VII (Vol. 10776, p. 107760R). International Society for Optics and Photonics.

Kopec, A. D., Kidd, K. A., Fisher, N. S., Bowen, M., Francis, C., Payne, K., & Bodaly, R. A. (2019). Spatial and temporal trends of mercury in the aquatic food web of the lower Penobscot River, Maine, USA, affected by a chlor-alkali plant. Science of The Total Environment, 649, 770-791.

Lamer, K., Fridlind, A. M., Ackerman, A. S., Kollias, P., Clothiaux, E. E., & Kelley, M. (2018). 2-SIM: a GCM-oriented ground-observation forward-simulator framework for objective evaluation of cloud and precipitation phase. Geoscientific Model Development, 11(10), 4195-4214.

Wang, C., Cerrato, R. M., & Fisher, N. S. (2018). Temporal changes in 137Cs concentrations in fish, sediments, and seawater off Fukushima Japan. Environmental Science & Technology.

Zipori, A., Reicher, N., Erel, Y., Rosenfeld, D., Sandler, A., Knopf, D. A., & Rudich, Y. (2018). The role of secondary ice processes in mid‐latitude continental clouds. Journal of Geophysical Research: Atmospheres.

Khairoutdinov, M. F., & Emanuel, K. (2018). Intraseasonal Variability in a Cloud-Permitting Near-Global Equatorial Aqua-Planet Model. Journal of the Atmospheric Sciences, (2018).

Zipori, A., Reicher, N., Erel, Y., Rosenfeld, D., Sandler, A., Knopf, D. A., & Rudich, Y. (2018). The Role of Secondary Ice Processes in Midlatitude Continental Clouds. Journal of Geophysical Research: Atmospheres.

Xiao, Y., Wu, K., Finn, D. and Chandrasekar, D. (2018) “Community Businesses as Social Units in Post-Disaster Recovery,” Journal of Planning Education and Research. https://doi.org/10.1177/0739456X18804328

Stevens, A. M., & Gobler, C. J. (2018). Interactive effects of acidification, hypoxia, and thermal stress on growth, respiration, and survival of four North Atlantic bivalves. Marine Ecology Progress Series, 604, 143-161.

Stevens, A. M., & Gobler, C. J. (2018). Interactive effects of acidification, hypoxia, and thermal stress on growth, respiration, and survival of four North Atlantic bivalves. Marine Ecology Progress Series, 604, 143-161.

Lau, Y. T., Santos, B., Barbosa, M., Espinosa, E. P., & Allam, B. (2018). Regulation of apoptosis-related genes during interactions between oyster hemocytes and the alveolate parasite Perkinsus marinus. Fish & shellfish immunology.

Zhu, J., Zhang, M., Zhang, Y., Zeng, X., & Xiao, X. (2018). Response of tropical terrestrial gross primary production to the super El Niño event in 2015. Journal of Geophysical Research: Biogeosciences.

Stepanuk, J. E., Read, A. J., Baird, R. W., Webster, D. L., & Thorne, L. H. (2018). Spatiotemporal patterns of overlap between short-finned pilot whales and the US pelagic longline fishery in the Mid-Atlantic Bight: An assessment to inform the management of fisheries bycatch. Fisheries Research, 208, 309-320.

Röhr, M. E., Holmer, M., Baum, J. K., Björk, M., Chin, D., Chalifour, L., Peterson, B., … & Duffy, J. E. Blue carbon storage capacity of temperate eelgrass (Zostera marina) meadows. Global Biogeochemical Cycles.

Ganetis, S. A., Colle, B. A., Yuter, S. E., & Hoban, N. P. (2018). Environmental Conditions Associated with Observed Snowband Structures within Northeast US Winter Storms. Monthly Weather Review, 146(11), 3675-3690.

Rossby, T., Flagg, C., Chafik, L., Harden, B., & Søiland, H. (2018). A Direct Estimate of Volume, Heat, and Freshwater Exchange Across the Greenland‐Iceland‐Faroe‐Scotland Ridge. Journal of Geophysical Research: Oceans.

Rossby, T., Flagg, C., Chafik, L., Harden, B., & Søiland, H. (2018). A direct estimate of volume, heat and fresh water exchange across the Greenland‐Iceland‐Faroe‐Scotland Ridge. Journal of Geophysical Research: Oceans.

Rossby, T., Flagg, C., Chafik, L., Harden, B., & Søiland, H. (2018). A direct estimate of volume, heat and fresh water exchange across the Greenland‐Iceland‐Faroe‐Scotland Ridge. Journal of Geophysical Research: Oceans.

Griffith, A. W., Shumway, S. E., & Gobler, C. J. (2018). Differential Mortality of North Atlantic Bivalve Molluscs During Harmful Algal Blooms Caused by the Dinoflagellate, Margalefidinium polykrikoides. Estuaries and Coasts, 1-14.

Illingworth, A. J., Battaglia, A., Bradford, J., Forsythe, M., Joe, P., Kollias, P., … & Midthassel, R. (2018). WIVERN: A new satellite concept to provide global in-cloud winds, precipitation and cloud properties. Bulletin of the American Meteorological Society, (2018).

Küchler, N., Kneifel, S., Kollias, P., & Löhnert, U. Revisiting liquid water content retrievals in warm stratified clouds: The modified Frisch. Geophysical Research Letters.

Frisk, M. G., Dolan, T. E., McElroy, A. E., Zacharias, J. P., Xu, H., & Hice, L. A. (2018). Assessing the drivers of the collapse of Winter Flounder: Implications for management and recovery. Journal of Sea Research, 141, 1-13.

Gownaris, N. J., Rountos, K. J., Kaufman, L., Kolding, J., Lwiza, K. M. M., & Pikitch, E. K. (2018). Water level fluctuations and the ecosystem functioning of lakes. Journal of Great Lakes Research.

Hameed, S., Wolfe, C. L., & Chi, L. (2018). Impact of the Atlantic Meridional Mode on Gulf Stream North Wall Position. Journal of Climate, (2018).

Armstrong, C. T., Erdner, D. L., McClelland, J. W., Sanderson, M. P., Anderson, D. M., Gobler, C. J., & Smith, J. L. (2018). Impact of nitrogen chemical form on the isotope signature and toxicity of a marine dinoflagellate. Marine Ecology Progress Series, 602, 63-76.

Ohnemus, D. C., Krause, J. W., Brzezinski, M. A., Collier, J. L., Baines, S. B., & Twining, B. S. (2018). The chemical form of silicon in marine Synechococcus. Marine Chemistry.

Rudd, J. W., Bodaly, R. A., Fisher, N. S., Kelly, C. A., Kopec, D., & Whipple, C. (2018). Fifty years after its discharge, methylation of legacy mercury trapped in the Penobscot Estuary sustains high mercury in biota. Science of The Total Environment, 642, 1340-1352.

Smith L.C., Dheilly, N.M., et al. (2018) Echinodermata: The Complex Immune System in Echinoderms. In: Cooper E. (eds) Advances in Comparative Immunology. Springer, Cham

Zhang, Z., & Colle, B. A. (2018). Impact of Dynamical Downscaling Two CMIP5 Models on the Historical and Future Changes in Winter Extratropical Cyclones Along the East Coast of North America. Journal of Climate, (2018).

Bokuniewicz, H., & Jang, S. G. (2018). Dredging Intensity: A Spatio-Temporal Indicator for Managing Marine Resources. Environmental management, 62(5), 987-994.

Zhang, M., Mariotti, A., Lin, Z., Ramasmamy, V., Lamarque, J., Xie, Z., & Zhu, J. (2018). Coordination to Understand and Reduce Global Model Biases by US and Chinese Institutions. Bulletin of the American Meteorological Society, (2018).

Zheng, C., Kar-Man Chang, E., Kim, H. M., Zhang, M., & Wang, W. (2018). Impacts of the Madden–Julian Oscillation on Storm-Track Activity, Surface Air Temperature, and Precipitation over North America. Journal of Climate, 31(15), 6113-6134.

Thomas, D. M., Lee, C. S., & Fisher, N. S. (2018). Bioaccumulation and trophic transfer of 137 Cs in marine and freshwater plankton. Chemosphere.

Waller R.F., Cleves P.A., Rubio-Brotons M., Woods A., Bender S.J., Edgcomb V., Gann, E.R., Jones, A.C., Teytelman, L., von Dassow, P., Wilhelm, S.W., and Collier, J.L. (2018) Strength in numbers: Collaborative science for new experimental model systems. PLoS Biol 16(7): e2006333. https://doi.org/10.1371/journal.pbio.2006333

Chang, E. K. M. (2018). CMIP5 Projected Change in Northern Hemisphere Winter Cyclones with Associated Extreme Winds. Journal of Climate, (2018).

Young, C. S., Peterson, B. J., & Gobler, C. J. (2018). The Bloom-Forming Macroalgae, Ulva, Outcompetes the Seagrass, Zostera marina, Under High CO 2 Conditions. Estuaries and Coasts, 1-16.

Wirth, C., & Warren, J. D. (2018). Spatial and temporal variation in toadfish (Opsanus tau) and cusk eel (Ophidion marginatum) mating choruses in eelgrass (Zostera marina) beds in a shallow, temperate estuary. Bioacoustics, 1-18.

He, B., Liu, P., Zhu, Y., & Hu, W. (2018). Prediction and predictability of Northern Hemisphere persistent maxima of 500-hPa geopotential height eddies in the GEFS. Climate Dynamics, 1-17.

Li, X., Doherty, A. C., Brownawell, B., & Lara-Martin, P. A. (2018). Distribution and diagenetic fate of synthetic surfactants and their metabolites in sewage-impacted estuarine sediments. Environmental Pollution.

Phillips, J. M., Bricelj, V. M., Mitch, M., Cerrato, R. M., MacQuarrie, S., & Connell, L. B. (2018). Biogeography of resistance to paralytic shellfish toxins in softshell clam, Mya arenaria (L.), populations along the Atlantic coast of North America. Aquatic Toxicology.

Liou, Y. C., Bluestein, H. B., French, M. M., & Wienhoff, Z. B. (2018). Single-Doppler velocity retrieval of the wind field in a tornadic supercell using mobile, phased-array, Doppler radar data. Journal of Atmospheric and Oceanic Technology, (2018).

Witts, J. D., Landman, N. H., Garb, M. P., Boas, C., Larina, E., Rovelli, R., … & Cochran, J. K. (2018). A fossiliferous spherule-rich bed at the Cretaceous–Paleogene (K–Pg) boundary in Mississippi, USA: Implications for the K–Pg mass extinction event in the Mississippi Embayment and Eastern Gulf Coastal Plain. Cretaceous Research.

Borges, A. V., Speeckaert, G., Champenois, W., Scranton, M. I., & Gypens, N. (2018). Productivity and temperature as drivers of seasonal and spatial variations of dissolved methane in the Southern Bight of the North Sea. Ecosystems, 21(4), 583-599.

Foley, C. M., Hart, T., & Lynch, H. J. (2018). King Penguin populations increase on South Georgia but explanations remain elusive. Polar Biology, 41(6), 1111-1122.

Chen, Y.S., Verlinde, J., Clothiaux, E.E., Ackerman, A.S., Fridlind, A.M., Chamecki, M., Kollias, P., Kirkpatrick, M.P., Chen, B.C., Yu, G. and Avramov, A., (2018). On the forward modeling of radar Doppler spectrum width from LES: Implications for model evaluation. Journal of Geophysical Research: Atmospheres.

Bassim, S., & Allam, B. (2018). SNP hot-spots in the clam parasite QPX. BMC genomics, 19(1), 486.

Hinrichs, C., Flagg, C.N. & Wilson, R.E. Estuaries and Coasts: Great South Bay After Sandy: Changes in Circulation and Flushing due to New Inlet (2018). https://doi.org/10.1007/s12237-018-0423-6

Pikitch, E. K. (2018). A tool for finding rare marine species. Science, 360(6394), 1180 LP-1182. 

Feng, H., Qian, Y., Cochran, J. K., Zhu, Q., Heilbrun, C., Li, L., … & Nazareski, E. (2018). Seasonal differences in trace element concentrations and distribution in Spartina alterniflora root tissue. Chemosphere, 204, 359-370.

Landman, N. H., Cochran, J. K., Slovacek, M., Larson, N. L., Garb, M. P., Brezina, J., & Witts, J. D. (2018). Isotope sclerochronology of ammonites (Baculites Compressus) from methane seep and non-seep sites in the Late Cretaceous Western Interior Seaway, USA: Implications for ammonite habitat and mode of life. American Journal of Science, 318(6), 603-639.

Tonjes, D. J., McElroy, A. E., Barnes-Pohjonen, R. K., Ninivaggi, D. V., Dawydiak, W., Greene, G. T., & Brownawell, B. J. (2018). Fate of methoprene in temperate salt marsh ditches following aerial applications. The Science of the total environment, 642, 394.

Madigan, D. J., Snodgrass, O. E., & Fisher, N. S. (2018). From migrants to mossbacks: tracer-and tag-inferred habitat shifts in the California yellowtail Seriola dorsalis. Marine Ecology Progress Series, 597, 221-230.

Madigan, D. J., Snodgrass, O. E., & Fisher, N. S. (2018). From migrants to mossbacks: tracer-and tag-inferred habitat shifts in the California yellowtail Seriola dorsalis. Marine Ecology Progress Series, 597, 221-230.

Finn, D. and Marshall, J.T. (2018) “Superstorm Sandy at Five: Lessons on Law as Catalyst and Obstacle to Long-Term Recovery Following Catastrophic Disasters.” Environmental Law Reporter News and Analysis. Vol 48. June, 2018. 10494-10519.

Cembella, A. D., Tillmann, U., Gobler, C. J., Morton, S. L., Tomas, C. R., Burkholder, J. M., … & Band‐Schmidt, C. J. (2018). Harmful Algal Species Fact Sheets. Harmful Algal Blooms: A Compendium Desk Reference, 561-638.

Lauritzen, P. H., Nair, R. D., Herrington, A. R., Callaghan, P., Goldhaber, S., Dennis, J. M., Reed, K.A., … & Ullrich, P. A. (2018). NCAR Release of CAM‐SE in CESM2. 0: A Reformulation of the Spectral Element Dynamical Core in Dry‐Mass Vertical Coordinates With Comprehensive Treatment of Condensates and Energy. Journal of Advances in Modeling Earth Systems, 10(7), 1537-1570.

Wirth, C., & Warren, J. D. Overlapping use of an artificial reef by humans and an apex predator (Tursiops truncatus) in the New York Bight. Marine Mammal Science.

Yang, F., Kollias, P., Shaw, R. A., & Vogelmann, A. M. (2018). Cloud droplet size distribution broadening during diffusional growth: ripening amplified by deactivation and reactivation. Atmospheric Chemistry and Physics, 18(10), 7313-7328.

Liu, P. (2018). MJO evolution and predictability disclosed by the RMM variant with balanced MJO variance in convection and zonal winds. Climate Dynamics, 1-15.

Kramer, B. J., Davis, T. W., Meyer, K. A., Rosen, B. H., Goleski, J. A., Dick, G. J., … & Gobler, C. J. (2018). Nitrogen limitation, toxin synthesis potential, and toxicity of cyanobacterial populations in Lake Okeechobee and the St. Lucie River Estuary, Florida, during the 2016 state of emergency event. PloS one, 13(5), e0196278.

Landman, N. H., Jicha, B. R., Cochran, J. K., Garb, M. P., Brophy, S. K., Larson, N. L., & Brezina, J. (2018). 40Ar/39Ar date of a bentonite associated with a methane seep deposit in the upper Campanian Baculites compressus Zone, Pierre Shale, South Dakota. Cretaceous Research.

Erickson, M. J., Colle, B. A., & Charney, J. J. (2018). Evaluation and Postprocessing of Ensemble Fire Weather Predictions over the Northeast United States. Journal of Applied Meteorology and Climatology, 57(5), 1135-1153.

Hardisty, D. S., Lyons, T. W., Riedinger, N., Isson, T. T., Owens, J. D., Aller, R. C., … & Masterson, A. L. (2018). An evaluation of sedimentary molybdenum and iron as proxies for pore fluid paleoredox conditions. American Journal of Science, 318(5), 527-556.

Schwaller, M. R., Lynch, H. J., Tarroux, A., & Prehn, B. (2018). A continent-wide search for Antarctic petrel breeding sites with satellite remote sensing. Remote Sensing of Environment, 210, 444-451.

Madigan, D.J., Li, M., Yin, R., Baumann, H., Snodgrass, O.E., Dewar, H., Krabbenhoft, D.P., Baumann, Z., Fisher, N.S., Balcom, P.H. and Sunderland, E.M., (2018). Mercury stable isotopes reveal influence of foraging depth on mercury concentrations and growth in Pacific bluefin tuna. Environmental science & technology.

Ray, R., Michaud, E., Aller, R. C., Vantrepotte, V., Gleixner, G., Walcker, R., … & Thouzeau, G. The sources and distribution of carbon (DOC, POC, DIC) in a mangrove dominated estuary (French Guiana, South America). Biogeochemistry, 1-25.

Youngflesh, C., Jenouvrier, S., Hinke, J. T., DuBois, L., St Leger, J., Trivelpiece, W. Z., … & Lynch, H. J. (2017). Rethinking ‘normal’: The role of stochasticity in the phenology of a synchronously breeding seabird. Journal of Animal Ecology.

Berdalet, E., Kudela, R., Banas, N. S., Bresnan, E., Burford, M. A., Davidson, K., Gobler, C.J. … & Montresor, M. (2018). GlobalHAB: fostering international coordination on harmful algal bloom research in aquatic systems. Global ecology and oceanography of harmful algal blooms. Springer, Cham, 425-447.

Blanton, B., Dresback, K., Colle, B., Kolar, R., Vergara, H., Hong, Y., … & Wachtendorf, T. (2018). An Integrated Scenario Ensemble-Based Framework for Hurricane Evacuation Modeling: Part 2-Hazard Modeling. Risk analysis: an official publication of the Society for Risk Analysis.

Arora, K., Goff, J. A., Wood, L. J., Flood, R. D., & Christensen, B. (2018). Analysis of hummocky bedforms offshore Fire Island, New York, generated by superstorm Sandy. Continental Shelf Research.

Hornstein, J., Espinosa, E. P., Cerrato, R. M., Lwiza, K. M., & Allam, B. (2018). The influence of temperature stress on the physiology of the Atlantic surfclam, Spisula solidissima. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology.

Wang, J., Kim, H. M., Chang, E. K., & Son, S. W. Modulation of the MJO and North Pacific Storm Track Relationship by the QBO. Journal of Geophysical Research: Atmospheres.

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Sollich, M; Yoshinaga, M.Y.; Häusler, S; Price, R.E.; Hinrichs, K-U; Bühring, S.I. (2017). Heat stress dictates microbial lipid composition along a thermal gradient in marine sediments. Frontiers in Microbiology.

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Taylor GT, Suter EA, Li ZQ, Chow S, Stinton D, Zaliznyak T and Beaupré SR (2017) Single-Cell Growth Rates in Photoautotrophic Populations Measured by Stable Isotope Probing and Resonance Raman Microspectrometry. Front. Microbiol. 8:1449. doi: 10.3389/fmicb.2017.01449

Li, Y., & Zhang, M. (2017). The Role of Shallow Convection over the Tibetan Plateau. Journal of Climate, 30(15), 5791-5803.

Hattenrath-Lehmann, T. K., & Gobler, C. J. (2017). Identification of unique microbiomes associated with harmful algal blooms caused by Alexandrium fundyense and Dinophysis acuminata. Harmful Algae, 68, 17-30.

Bond, M. E., Valentin-Albanese, J., Babcock, E. A., Abercrombie, D., Lamb, N. F., Miranda, A., Pikitch, E.K. & Chapman, D. D. (2017). Abundance and size structure of a reef shark population within a marine reserve has remained stable for more than a decade. Marine Ecology Progress Series, 576, 1-10.

Kim, H. M. (2017). The impact of the mean moisture bias on the key physics of MJO propagation in the ECMWF reforecast. Journal of Geophysical Research: Atmospheres, 122(15), 7772-7784.

Zhang, Z., & Colle, B. A. (2017). Changes in Extratropical Cyclone Precipitation and Associated Processes During the 21st Century over Eastern North America and the Western Atlantic Using a Cyclone-Relative Approach. Journal of Climate, (2017).

Collier, J. L., Geraci-Yee, S., Lilje, O., & Gleason, F. H. (2017). Possible impacts of zoosporic parasites in diseases of commercially important marine mollusc species: part II. Labyrinthulomycota. Botanica Marina, 60(4), 409-417.

Gleason, F. H., Lilje, O., Dang, C., Geraci-Yee, S., & Collier, J. L. (2017). Possible impacts of zoosporic parasites in diseases of commercially important marine mollusc species: part I. Perkinsozoa. Botanica Marina, 60(4), 401-408.

Dheilly NM, Bolnick D, Bordenstein S, Brindley PJ, Figueres C, Holmes EC, Martinez Martinez J, Phillips AJ, Poulin R, Rosario K (2017). Parasite Microbiome Project: Systematic investigation of microbiome dynamics within and across parasite-host interactions mSystems 2(4)

McDowall, P., & Lynch, H. J. (2017). The importance of topographically corrected null models for analyzing ecological point processes. Ecology.

Madigan, D. J., Baumann, Z., Snodgrass, O. E., Dewar, H., Berman-Kowalewski, M., Weng, K. C., … & Fisher, N. S. (2017). Assessing Fukushima-derived radiocesium in migratory Pacific predators. Environmental Science & Technology, 51(16), 8962-8971.

Scott, R. C., Lubin, D., Vogelmann, A. M., & Kato, S. (2017). West Antarctic Ice Sheet cloud cover and surface radiation budget from NASA A-train satellites. Journal of Climate, 30(16), 6151-6170.

Rountos, K. J., Gobler, C. J., & Pikitch, E. K. (2017). Ontogenetic Differences in Swimming Behavior of Fish Exposed to the Harmful Dinoflagellate Cochlodinium polykrikoides. Transactions of the American Fisheries Society, 146(5), 1081-1091.

Zhou, X., Heus, T., & Kollias, P. (2017). Influences of Drizzle on Stratocumulus Cloudiness and Organization. Journal of Geophysical Research: Atmospheres.

Monastero, R. N., Karimi, R., Nyland, J. F., Harrington, J., Levine, K., & Meliker, J. R. (2017). Mercury exposure, serum antinuclear antibodies, and serum cytokine levels in the Long Island Study of Seafood Consumption: A cross-sectional study in NY, USA. Environmental Research, 156, 334-340.

Parishani, H., Pritchard, M. S., Bretherton, C. S., Wyant, M. C., & Khairoutdinov, M. (2017). Toward low cloud‐permitting cloud superparameterization with explicit boundary layer turbulence. Journal of Advances in Modeling Earth Systems.

Henderson, M. E., Mills, K. E., Thomas, A. C., Pershing, A. J., & Nye, J. A. Effects of spring onset and summer duration on fish species distribution and biomass along the Northeast United States continental shelf. Reviews in Fish Biology and Fisheries, 1-14.

Kang, Y., Kudela, R. M., & Gobler, C. J. Quantifying nitrogen assimilation rates of individual phytoplankton species and plankton groups during harmful algal blooms via sorting flow cytometry. Limnology and Oceanography: Methods.

Tridon, F., Battaglia, A., Luke, E., & Kollias, P. (2017). Rain retrieval from dual‐frequency radar Doppler spectra: validation and potential for a midlatitude precipitating case‐study. Quarterly Journal of the Royal Meteorological Society, 143(704), 1364-1380.

Taylor, D. (2017) Palm Up, Palm Down. San Antonio, TX: Wings Press.

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Nicolas, J. P., Vogelmann, A. M., Scott, R. C., Wilson, A. B., Cadeddu, M. P., Bromwich, D. H., … & Powers, H. H. (2017). January 2016 extensive summer melt in West Antarctica favoured by strong El Niño. Nature communications, 8, ncomms15799.

Melnychuk, M. C., Dunton, K. J., Jordaan, A., McKown, K. A., & Frisk, M. G. (2017). Informing conservation strategies for the endangered Atlantic sturgeon using acoustic telemetry and multi‐state mark–recapture models. Journal of Applied Ecology, 54(3), 914-925.

Miller, C., Karimi, R., Zhang, Q., Yang, J., & Meliker, J. (2017). Mercury, eicosapentanoic acid and docosahexaenoic acid demonstrate limited effect on plasma paraoxonase-1 activity and blood pressure among avid seafood consumers in the Long Island Study of Seafood Consumption, NY, USA. International journal of hygiene and environmental health, 220(2), 373-377.

Isaacman-VanWertz, G., Massoli, P., O’Brien, R.E., Nowak, J.B., Canagaratna, M.R., Jayne, J.T., Worsnop, D.R., Su, L., Knopf, D.A., Misztal, P.K. and Arata, C., (2017). Using advanced mass spectrometry techniques to fully characterize atmospheric organic carbon: current capabilities and remaining gaps. Faraday Discussions.

Acquistapace, C., Kneifel, S., Löhnert, U., Kollias, P., Maahn, M., & Bauer-Pfundstein, M. (2017). Optimizing observations of drizzle onset with millimeter-wavelength radars. Atmospheric Measurement Techniques, 10(5), 1783-1802.

Chen, J., Pycke, B. F., Brownawell, B. J., Kinney, C. A., Furlong, E. T., Kolpin, D. W., & Halden, R. U. (2017). Occurrence, temporal variation, and estrogenic burden of five parabens in sewage sludge collected across the United States. Science of The Total Environment, 593, 368-374.

Rosen, B. H., Davis, T. W., Gobler, C. J., Kramer, B. J., & Loftin, K. A. (2017). Cyanobacteria of the 2016 Lake Okeechobee and Okeechobee Waterway harmful algal bloom (No. 2017-1054). US Geological Survey.

Price, R.E., and Giovannelli, D. 2017. A Review of the Geochemistry and Microbiology of Marine Shallow-Water Hydrothermal Vents, Reference Module in Earth Systems and Environmental Sciences, Elsevier, 2017. 30-May-17. doi: 10.1016/B978-0-12-409548-9.09523-3.

Yang, K., Davidson, R. A., Nozick, L. K., Blanton, B., & Colle, B. (2017). Scenario-Based Hazard Trees for Depicting Resolution of Hurricane Uncertainty over Time. Natural Hazards Review, 18(3), 04017001.

Brzezinski, M. A., Krause, J. W., Baines, S. B., Collier, J. L., & Ohnemus, D. C. (2017). Patterns and regulation of silicon accumulation in Synechococcus spp. Journal of Phycology.

Farhadzadeh, A. (2017). A study of Lake Erie seiche and low frequency water level fluctuations in the presence of surface ice. Ocean Engineering, 135, 117-136.

Rider, T. (2017). Review of Between Stony Brook Harbor Tides: The Natural History of a Long Island Pocket Bay by R. Lawrence Swanson and Malcolm J. Bowman. Long Island History Journal, Vol 26-1

Swanson, R. L., Wilson, R., Brownawell, B., & Willig, K. (2017). Environmental consequences of the flooding of the Bay Park Sewage Treatment Plant during Superstorm Sandy. Marine Pollution Bulletin.

Lee, C. S., & Fisher, N. S. (2017). Bioaccumulation of methylmercury in a marine copepod. Environmental toxicology and chemistry, 36(5), 1287-1293.

Mahmoudi, N., Beaupré, S. R., Steen, A. D., & Pearson, A. (2017). Sequential bioavailability of sedimentary organic matter to heterotrophic bacteria. Environmental Microbiology.

Narenpitak, P., Bretherton, C. S., & Khairoutdinov, M. F. (2017). Cloud and circulation feedbacks in a near‐global aquaplanet cloud‐resolving model. Journal of Advances in Modeling Earth Systems.

Krause, J. W., Brzezinski, M. A., Baines, S. B., Collier, J. L., Twining, B. S., & Ohnemus, D. C. (2017). Picoplankton contribution to biogenic silica stocks and production rates in the Sargasso Sea. Global Biogeochemical Cycles.

Jackson, L. J., Furman, B. T., & Peterson, B. J. (2017). Morphological response of Zostera marina reproductive shoots to fertilized porewater. Journal of Experimental Marine Biology and Ecology, 489, 1-6.

Aller, J. Y., Radway, J. C., Kilthau, W. P., Bothe, D. W., Wilson, T. W., Vaillancourt, R. D., … & Knopf, D. A. (2017). Size-resolved characterization of the polysaccharidic and proteinaceous components of sea spray aerosol. Atmospheric Environment, 154, 331-347.

Gobler, C. J., Doherty, O. M., Hattenrath-Lehmann, T. K., Griffith, A. W., Kang, Y., & Litaker, R. W. (2017). Ocean warming since 1982 has expanded the niche of toxic algal blooms in the North Atlantic and North Pacific oceans. Proceedings of the National Academy of Sciences, 201619575. doi:10.1073/pnas.1619575114

Farhadzadeh, A., Hashemi, M. R., & Neill, S. (2017). Characterizing the Great Lakes Hydrokinetic Renewable Energy Resource: Lake Erie Wave, Surge and Seiche Characteristics. Energy.

Suter, E. A., Scranton, M. I., Chow, S., Stinton, D., Medina Faull, L., & Taylor, G. T. (2017). Niskin bottle sample collection aliases microbial community composition and biogeochemical interpretation. Limnology and Oceanography, 62(2), 606-617.

Humphries, G. R. W., Naveen, R., Schwaller, M., Che-Castaldo, C., McDowall, P., Schrimpf, M., & Lynch, H. J. (2017). Mapping Application for Penguin Populations and Projected Dynamics (MAPPPD): data and tools for dynamic management and decision support. Polar Record, 1-7.

Zheng, M., Chang, E.K., Colle, B.A., Luo, Y. and Zhu, Y., 2017. Applying Fuzzy Clustering to a Multimodel Ensemble for US East Coast Winter Storms: Scenario Identification and Forecast Verification. Weather and Forecasting, 32(3), pp.881-903.

Riedinger N, Brunner B, Krastel S, Arnold GL, Wehrmann LM, Formolo MJ, Beck A, Bates SM, Henkel S, Kasten S and Lyons TW (2017) Sulfur cycling in an iron oxide-dominated, dynamic marine depositional system: The Argentine continental margin. Frontiers in Earth Sciences 5:33. doi:10.3389/feart.2017.00033

Farhadzadeh, A., & Gangai, J. (2017). Numerical Modeling of Coastal Storms for Ice-Free and Ice-Covered Lake Erie. Journal of Coastal Research.

Schmidt, S. K., Darcy, J. L., Sommers, P., Gunawan, E., Knelman, J. E., & Yager, K. (2017). Freeze–thaw revival of rotifers and algae in a desiccated, high-elevation (5500 meters) microbial mat, high Andes, Perú. Extremophiles, 1-8.

Roberts, K. J., Colle, B. A., & Korfe, N. (2017). Impact of Simulated Twenty-First-Century Changes in Extratropical Cyclones on Coastal Flooding at the Battery, New York City. Journal of Applied Meteorology and Climatology, 56(2), 415-432.

Painemal, D., Chiu, J. Y. C., Minnis, P., Yost, C., Zhou, X., Cadeddu, M., … & Kollias, P. (2017). Aerosol and cloud microphysics covariability in the northeast Pacific boundary layer estimated with ship‐based and satellite remote sensing observations. Journal of Geophysical Research: Atmospheres, 122(4), 2403-2418.

Cernadas-Martín S, Suter EA, Scranton MI, Astor Y, Taylor GT (2017) Aerobic and anaerobic ammonium oxidizers in the Cariaco Basin: distributions of major taxa and nitrogen species across the redoxcline. Aquat Microb Ecol 79:31-48. https://doi.org/10.3354/ame01817

Foley, C. M., Lynch, M. A., Thorne, L. H., & Lynch, H. J. (2017). Listing Foreign Species under the Endangered Species Act: A Primer for Conservation Biologists. BioScience, bix027.

Chen, J., Pycke, B. F., Brownawell, B. J., Kinney, C. A., Furlong, E. T., Kolpin, D. W., & Halden, R. U. (2017). Occurrence, temporal variation, and estrogenic burden of five parabens in sewage sludge collected across the United States. Science of The Total Environment, 593, 368-374.

Wolfe, C. L., Cessi, P., & Cornuelle, B. D. (2017). An Intrinsic Mode of Interannual Variability in the Indian Ocean. Journal of Physical Oceanography, 47(3), 701-719.

Kim, H. M., Zhou, Y., & Alexander, M. A. (2017). Changes in atmospheric rivers and moisture transport over the Northeast Pacific and western North America in response to ENSO diversity. Climate Dynamics, 1-14.

Xie, J., & Zhang, M. (2017). Role of internal atmospheric variability in the 2015 extreme winter climate over the North American continent. Geophysical Research Letters.

Liu, Q., Collier, J. L., & Allam, B. (2017). Seasonality of QPX disease in the Raritan Bay (NY) wild hard clam (Mercenaria mercenaria) population. Aquaculture Research, 48(3), 1269-1278.

Ma, C. G., & Chang, E. K. (2017). Impacts of storm track variations on winter time extreme weather events over the continental US. Journal of Climate, (2017).

China, S., Alpert, P. A., Zhang, B., Schum, S., Dzepina, K., Wright, K., … & Knopf, D. A. (2017). Ice cloud formation potential by free tropospheric particles from long‐range transport over the Northern Atlantic Ocean. Journal of Geophysical Research: Atmospheres.

Guo, Y., Shinoda, T., Lin, J., & Chang, E. K. (2017). Variations of Northern Hemisphere Storm Track and Extratropical Cyclone Activity Associated with the Madden-Julian Oscillation. Journal of Climate, (2017).

Wang, W. L., Lee, C., Cochran, J. K., Primeau, F. W., & Armstrong, R. A. (2017). A novel statistical analysis of chloropigment fluxes to constrain particle exchange and organic matter remineralization rate constants in the Mediterranean Sea. Marine Chemistry, 192, 49-58.

Dvarskas, A. (2017). Dynamically linking economic models to ecological condition for coastal zone management: Application to sustainable tourism planning. Journal of Environmental Management, 188, 163-172.

Yin, H., Zhu, Q., & Aller, R. C. (2017). An irreversible planar optical sensor for multi-dimensional measurements of sedimentary H 2 S. Marine Chemistry.

Herrington, A. R. and K. A. Reed (2017) An explanation for the sensitivity of the Community Atmosphere Model to horizontal resolution on aqua-planets. Journal of Climate. doi: 10.1175/JCLI-D-16-0069.1

Karatayev, A. Y., Burlakova, L. E., & Padilla, D. K. Can introduced species replace lost biodiversity? A test with freshwater molluscs. Hydrobiologia, 1-12.

Hattenrath-Lehmann, T. K., Ossiboff, R. J., Burnell, C. A., Rauschenberg, C. D., Hynes, K., Burke, R. L., … & Gobler, C. J. (2017). The role of a PSP-producing Alexandrium bloom in an unprecedented diamondback terrapin (Malaclemys terrapin) mortality event in Flanders Bay, New York, USA. Toxicon, 129, 36-43.

Tamborski, J. J., Cochran, J. K., & Bokuniewicz, H. J. (2017). Application of 224 Ra and 222 Rn for evaluating seawater residence times in a tidal subterranean estuary. Marine Chemistry. 189: 32–45.

Wehner, M. F., Reed, K. A., & Zarzycki, C. M. (2017). High-Resolution Multi-decadal Simulation of Tropical Cyclones. In Hurricanes and Climate Change (pp. 187-211). Springer International Publishing.

Kasina, M., Bock, S., Würdemann, H., Pudlo, D., Picard, A., Lichtschlag, A., März, C., Wagenknecht, L., Wehrmann, L.M., Vogt, C., Meister, P. (2017) Mineralogical and geochemical analysis of Fe-phases in drill-cores from the Triassic Stuttgart Formation at Ketzin CO2 storage site before CO2 arrival. Environ Earth Sci 76: 161. doi:10.1007/s12665-017-6460-9

McCoy, E., Borrett, S. R., LaPeyre, M. K., & Peterson, B. J. (2017). Estimating the impact of oyster restoration scenarios on transient fish production. Restoration Ecology.

Charnawskas, J. C., Alpert, P. A., Lambe, A., Berkemeier, T., O’Brien, R. E., Massoli, P., … Knopf, D.A. & Davidovits, P. (2017). Condensed-phase biogenic-anthropogenic interactions with implications for cold cloud formation. Faraday Discussions.

Martinez, C. M., Duplisea, D. E., Cerrato, R. M., & Frisk, M. G. (2017). Exploration of Trends in Interspecific Abundance-Occupancy Relationships Using Empirically Derived Simulated Communities. PloS one, 12(1), e0170816.

Colle, B. A., Naeger, A. R., & Molthan, A. (2017). Evolution of an Intense Warm Frontal Precipitation Band During the GPM Cold-Season Precipitation Experiment (GCPEx)

Slade, J. H., Shiraiwa, M., Arangio, A., Su, H., Pöschl, U., Wang, J., & Knopf, D. A. (2017). Cloud droplet activation through oxidation of organic aerosol influenced by temperature and particle phase state. Geophysical Research Letters.

Wang, J., Kim, H. M., & Chang, E. K. (2017). Changes in Northern Hemisphere Winter Storm Tracks under the Background of Arctic Amplification. Journal of Climate, (2017).

Rubin, E., Tanguy, A., Pales Espinosa, E., & Allam, B. (2017). Differential Gene Expression in Five Isolates of the Clam Pathogen, Quahog Parasite Unknown (QPX). Journal of Eukaryotic Microbiology.

Seimon TA, Seimon A, Yager K, Reider K, Delgado A, Sowell P, Tupayachi A, Konecky B, McAloose D, Halloy S. Long-term monitoring of tropical alpine habitat change, Andean anurans, and chytrid fungus in the Cordillera Vilcanota, Peru: Results from a decade of study. Ecology and Evolution;00:1–14

Scoccimarro, E., Fogli, P. G., Reed, K. A., Gualdi, S., Masina, S., & Navarra, A. (2017). Tropical Cyclone Interaction with the Ocean: The Role of High-Frequency (Subdaily) Coupled Processes. Journal of Climate, 30(1), 145-162.

Barrett, B. S., & Hameed, S. (2017). Seasonal Variability in Precipitation in Central and Southern Chile: Modulation by the South Pacific High. Journal of Climate, 30(1), 55-69.

Kim, O. Y., Kim, H. M., Lee, M. I., & Min, Y. M. (2017). Dynamical–statistical seasonal prediction for western North Pacific typhoons based on APCC multi-models. Climate Dynamics, 48(1-2), 71-88.

Pochron, S., Fiorenza, A., Sperl, C., Ledda, B., Patterson, C., Tucker, C., … & Panico, N. (2017). The response of earthworms (Eisenia fetida) and soil microbes to the crumb rubber material used in artificial turf fields. Chemosphere.

Ghate, V. P., & Kollias, P. (2016). On the controls of daytime precipitation in the Amazonian dry season. Journal of Hydrometeorology, 17(12), 3079-3097.

Rodellas, V., Garcia-Orellana, J., Trezzi, G., Masqué, P., Stieglitz, T.C., Bokuniewicz, H., Cochran, J.K. and Berdalet, E., (2017). Using the radium quartet to quantify submarine groundwater discharge and porewater exchange. Geochimica et Cosmochimica Acta, 196, pp.58-73.

Cao, L., Chen, Y., Dong, S., Hanson, A., Huang, B., Leadbitter, D., Little, D.C., Pikitch, E.K., Qiu, Y., de Mitcheson, Y.S. and Sumaila, U.R., 2017. Opportunity for marine fisheries reform in China. Proceedings of the National Academy of Sciences, 114(3), pp.435-442.

Feng, H., Qian, Y., Cochran, J.K., Zhu, Q., Hu, W., Yan, H., Li, L., Huang, X., Chu, Y.S., Liu, H., Yoo, S., & Liu, C.J., (2017) Nanoscale measurement of trace element distributions in Spartina alterniflora root tissue during dormancy, Scientific Reports, 7:40420.

Furman, B. T., Jackson, L. J., & Peterson, B. J. (2017). Edaphic resource foraging by Zostera marina (Linnaeus) patches. Journal of Experimental Marine Biology and Ecology, 486, 214-221.

Chang, E. K. (2017). Projected Significant Increase in the Number of Extreme Extratropical Cyclones in the Southern Hemisphere. Journal of Climate, (2017).

Morse, R. E., Friedland, K. D., Tommasi, D., Stock, C., & Nye, J. (2017). Distinct zooplankton regime shift patterns across ecoregions of the US Northeast continental shelf Large Marine Ecosystem. Journal of Marine Systems, 165, 77-91.

Jin, J., Zeng, Q., Wu, L., Liu, H., & Zhang, M. (2017). Formulation of a new ocean salinity boundary condition and impact on the simulated climate of an oceanic general circulation model. Science China Earth Sciences, 60(3), 491-500.

Flood, R. D., Violante, R. A., Gorgas, T., Schwarz, E., Grützner, J., Uenzelmann-Neben, G., … & St-Onge, G. (2017). IODP workshop: developing scientific drilling proposals for the Argentina Passive Volcanic Continental Margin (APVCM)–basin evolution, deep biosphere, hydrates, sediment dynamics and ocean evolution. Scientific Drilling, 22, 49.

Weinstein, A., Navarrete, L., Ruppel, C., Weber, T.C., Leonte, M., Kellermann, M.Y., Arrington, E.C., Valentine, D.L., Scranton, M.I. and Kessler, J.D., 2016. Determining the flux of methane into Hudson Canyon at the edge of methane clathrate hydrate stability. Geochemistry, Geophysics, Geosystems, 17(10), pp.3882-3892.

Wu, C., Lin, Z., He, J., Zhang, M., Liu, X., Zhang, R., & Brown, H. (2016). A process‐oriented evaluation of dust emission parameterizations in CESM: Simulation of a typical severe dust storm in East Asia. Journal of Advances in Modeling Earth Systems, 8(3), 1432-1452.

Geller, M. A., Zhou, T., Shindell, D., Ruedy, R., Aleinov, I., Nazarenko, L., … & Field, R. D. (2016). Modeling the QBO–Improvements Resulting from Higher Model Vertical Resolution. Journal of Advances in Modeling Earth Systems.

Tang, T., & Lee, C. (2016). The role of surface layer proteins in the degradation of a photosynthetic prokaryote, the cyanobacterium Synechococcus sp. Marine Chemistry, 186, 33-45.

Harke, M. J., Jankowiak, J. G., Morrell, B. K., & Gobler, C. J. (2016). Transcriptomic responses in the bloom-forming cyanobacterium Microcystis induced during exposure to zooplankton. Applied and Environmental Microbiology, AEM-02832.

Gobler, C. J., Clark, H. R., Griffith, A. W., & Lusty, M. W. (2016). Diurnal Fluctuations in Acidification and Hypoxia Reduce the Growth and Survival of Larval and Juvenile Bay Scallops (Argopecten irradians) and Hard Clams (Mercenaria mercenaria). Frontiers in Marine Science, 3, 282.

Moffet, R.C., O’Brien, R.E., Alpert, P.A., Kelly, S.T., Pham, D.Q., Gilles, M.K., Knopf, D.A. and Laskin, A., 2016. Morphology and mixing of black carbon particles collected in central California during the CARES field study. Atmospheric Chemistry and Physics, 16(22), pp.14515-14525.

Duplisea, D. E., Frisk, M. G., & Trenkel, V. M. (2016). Extinction Debt and Colonizer Credit on a Habitat Perturbed Fishing Bank. PloS one, 11(11), e0166409.

Li, L., Liu, H., Wang, L., Yue, S., Tong, X., Zaliznyak, T., Taylor, G.T. and Wong, S.S., 2016. Chemical Strategies for Enhancing Activity and Charge Transfer in Ultrathin Pt Nanowires Immobilized onto Nanotube Supports for the Oxygen Reduction Reaction. ACS applied materials & interfaces, 8(50), pp.34280-34294.

Acharya, B., Alexandre, J., Baines, S., Benes, P., Bergmann, B., Bernabéu, J., … & de Montigny, M. (2016). Search for magnetic monopoles with the MoEDAL forward trapping detector in 13 TeV proton-proton collisions at the LHC. arXiv preprint arXiv:1611.06817.

Gownaris, N. J., Pikitch, E. K., Aller, J. Y., Kaufman, L. S., Kolding, J., Lwiza, K. M., … & Rountos, K. J. (2016). Fisheries and water level fluctuations in the world’s largest desert lake. Ecohydrology.

Oue, M., P. Kollias, K. W. North, A. Tatarevic, S. Endo, A. M. Vogelmann, and W. I. Gustafson (2016): Estimation of cloud fraction profile in shallow convection using a scanning cloud radar. Geophysical Research Letters, 43,10998–11006, doi: 10.1002/2016GL070776.

Yu, J. (2016). A terrain-following model of wave boundary layers. Ocean Modelling, 108, 20-29.

Zeng, Y., Walker, H., & Zhu, Q. (2016). Reduction of nitrate by NaY zeolite supported Fe, Cu/Fe and Mn/Fe nanoparticles. Journal of Hazardous Materials.

Swanson, R. L., & Bowman, M. J. (2016). Between Stony Brook Harbor Tides: The Natural History of a Long Island Pocket Bay. SUNY Press.

Swanson, R. L., & Bowman, M. J. (2016). Between Stony Brook Harbor Tides: The Natural History of a Long Island Pocket Bay. SUNY Press.

Lu, Q., Ruan, Z., Wang, D. P., Chen, D., & Wu, Q. (2016). Zonal transport from the western boundary and its role in warm water volume changes during ENSO. Journal of Physical Oceanography, (2016).

Tang, S., Xie, S., Zhang, Y., Zhang, M., Schumacher, C., Upton, H., … & Feng, Z. (2016). Large-scale vertical velocity, diabatic heating and drying profiles associated with seasonal and diurnal variations of convective systems observed in the GoAmazon2014/5 experiment. Atmospheric Chemistry and Physics, 16(22), 14249-14264.

Lynch, M. A., Foley, C. M., Thorne, L. H., & Lynch, H. J. (2016). Improving the use of biological data in Antarctic management. Antarctic Science, 28(6), 425-431.

Pendergrass, A. G., Reed, K. A., & Medeiros, B. (2016). The link between extreme precipitation and convective organization in a warming climate: Global radiative‐convective equilibrium simulations. Geophysical Research Letters, 43(21).

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Kulp, R. E., & Peterson, B. J. (2016). Evaluating the Impact of Mesopredators on Oyster Restoration in the New York Metropolitan Region. Journal of Shellfish Research, 35(4), 801-807.

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Madigan, D. J., Chiang, W. C., Wallsgrove, N. J., Popp, B. N., Kitagawa, T., Choy, C. A., … & Sun, C. L. (2016). Intrinsic tracers reveal recent foraging ecology of giant Pacific bluefin tuna at their primary spawning grounds. Marine Ecology Progress Series, 553, 253-266.

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Knoll, K., Landman, N. H., Cochran, J. K., Macleod, K. G., & Sessa, J. A. (2016). Microstructural preservation and the effects of diagenesis on the carbon and oxygen isotope composition of Late Cretaceous aragonitic mollusks from the Gulf Coastal Plain and the Western Interior Seaway. American Journal of Science, 316(7), 591-613.

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Moffet, R. C., O’Brien, R. E., Alpert, P., Kelly, S. T., Pham, D. Q., Gilles, M. K., … & Laskin, A. Morphology and Mixing of BC Particles Collected in Central California During the CARES Field Study.

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Wang, K., Espinosa, E. P., & Allam, B. (2016). Effect of “heat shock” treatments on QPX disease and stress response in the hard clam, Mercenaria mercenaria. Journal of invertebrate pathology, 138, 39-49.

Rodriguez-Mora, M. J., Edgcomb, V. P., Taylor, C., Scranton, M. I., Taylor, G. T., & Chistoserdov, A. Y. (2016). The diversity of sulfide oxidation and sulfate reduction genes expressed by the bacterial communities of the Cariaco Basin, Venezuela. The open microbiology journal, 10, 140.

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Sagarese, S. R., Frisk, M. G., Cerrato, R. M., Sosebee, K. A., Musick, J. A., & Rago, P. J. (2016). Diel Variations in Survey Catch Rates and Survey Catchability of Spiny Dogfish and their Pelagic Prey in the Northeast US Continental Shelf Large Marine Ecosystem. Marine and Coastal Fisheries, 8(1), 244-262.

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Thorne, L. H., Conners, M. G., Hazen, E. L., Bograd, S. J., Antolos, M., Costa, D. P., & Shaffer, S. A. (2016). Effects of El Niño-driven changes in wind patterns on North Pacific albatrosses. Journal of The Royal Society Interface, 13(119), 20160196.

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Kawano, M., Uno, S., Koyama, J., Kokushi, E., & McElroy, A. (2016). Effects of oxygenated polycyclic aromatic hydrocarbons on the early life stages of Japanese medaka. Environmental Science and Pollution Research, 1-8.

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Landman, N. H., Kruta, I., Denton, J. S., & Cochran, J. K. (2016). Getting unhooked: comment on the hypothesis that heteromorph ammonites were attached to kelp branches on the sea floor, as proposed by. Journal of Molluscan Studies, 82(2), 351-355

Pershing, A.J., Alexander, M.A., Hernandez, C.M., Kerr, L.A., Le Bris, A., Mills, K.E., Nye, J.A., Record, N.R., Scannell, H.A., Scott, J.D. and Sherwood, G.D., 2016. Response to Comments on “Slow adaptation in the face of rapid warming leads to collapse of the Gulf of Maine cod fishery”. Science, 352(6284), pp.423-423.

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Young, C. S., & Gobler, C. J. (2016). Ocean Acidification Accelerates the Growth of Two Bloom-Forming Macroalgae. PloS one, 11(5), e0155152.

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Chen, J., Liu, Y., Zhang, M., & Peng, Y. (2016). New Understanding and Quantification of the Regime Dependence of Aerosol‐Cloud Interaction for Studying Aerosol Indirect Effects. Geophysical Research Letters.

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Baines, S. B., Chen, X., Vogt, S., Fisher, N. S., Twining, B. S., & Landry, M. R. (2016). Microplankton trace element contents: implications for mineral limitation of mesozooplankton in an HNLC area. Journal of Plankton Research, fbv109.

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Chapperon, C., Volkenborn, N., Clavier, J., Séité, S., Seabra, R., & Lima, F. P. (2016). Exposure to solar radiation drives organismal vulnerability to climate: Evidence from an intertidal limpet. Journal of Thermal Biology, 57, 92-100.

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Karimi, R., Vacchi-Suzzi, C., & Meliker, J. R. (2016). Mercury exposure and a shift toward oxidative stress in avid seafood consumers. Environmental research, 146, 100-107.

Chang, E. K., Ma, C. G., Zheng, C., & Yau, A. M. (2016). Observed and projected decrease in Northern Hemisphere extratropical cyclone activity in summer and its impacts on maximum temperature. Geophysical Research Letters, 43(5), 2200-2208.

Wang, K., del Castillo, C., Corre, E., Espinosa, E. P., & Allam, B. (2016). Clam focal and systemic immune responses to QPX infection revealed by RNA-seq technology. BMC genomics, 17(1), 1.

Choi, J., Son, S. W., Ham, Y. G., Lee, J. Y., & Kim, H. M. (2016). Seasonal-to-interannual prediction skills of near-surface air temperature in the CMIP5 decadal hindcast experiments. Journal of Climate, (2016).

Giner, J. L., Ceballos, H., Tang, Y. Z., & Gobler, C. J. (2016). Sterols and Fatty Acids of the Harmful Dinoflagellate Cochlodinium polykrikoides. Chemistry & biodiversity, 13(2), 249-252.

O’Leary, S. J., Martinez, C. M., Baumann, H., Abercrombie, D. L., Poulakis, G. R., Murray, C. H., … & Chapman, D. D. (2016). Population genetics and geometric morphometrics of the key silverside, Menidia conchorum, a marine fish in a highly-fragmented, inland habitat. Bulletin of Marine Science.

Espinosa, E. P., Cerrato, R. M., Wikfors, G. H., & Allam, B. (2016). Modeling food choice in the two suspension-feeding bivalves, Crassostrea virginica and Mytilus edulis. Marine Biology, 163(2), 1-13.

Ladino, L.A., Yakobi-Hancock, J.D., Kilthau, W.P., Mason, R.H., Si, M., Li, J., Miller, L.A., Schiller, C.L., Huffman, J.A., Aller, J.Y. and Knopf, D.A., 2016. Addressing the ice nucleating abilities of marine aerosol: A combination of deposition mode laboratory and field measurements. Atmospheric Environment.

Volkenborn N., Woodin S.A., Wethey D.S., Polerecky L. (2016) Bioirrigation in marine sediments. Reference Module in Earth Systems and Environmental Sciences. DOI: 10.1016/B978-0-12-409548-9.09525-7

Cahill, A. E., & Levinton, J. S. (2016). Genetic differentiation and reduced genetic diversity at the northern range edge of two species with different dispersal modes. Molecular ecology, 25(2), 515-526.

Pinaud, S., Portela, J., Duval, D., Nowacki, F.C., Olive, M.A., Allienne, J.F., Galinier, R., Dheilly, N.M., Kieffer-Jaquinod, S., Mitta, G. and Théron, A., 2016. A Shift from Cellular to Humoral Responses Contributes to Innate Immune Memory in the Vector Snail Biomphalaria glabrata. PLoS Pathog, 12(1), p.e1005361.

Hattenrath-Lehmann, T. K., Zhen, Y., Wallace, R. B., Tang, Y. Z., & Gobler, C. J. (2016). Mapping the distribution of cysts from the toxic dinoflagellate, Cochlodinium polykrikoides, in bloom-prone estuaries using a novel fluorescence in situ hybridization assay. Applied and environmental microbiology, 82 (4):1114-1125; 10.1128/AEM.03457-15 FEB 2016

Liu, P., Zhang, Q., Zhang, C., Zhu, Y., Khairoutdinov, M., Kim, H. M., … & Zhang, M. (2016). A Revised Real-Time Multivariate MJO Index. Monthly Weather Review, 144 (2):627-642; 10.1175/MWR-D-15-0237.1 FEB 2016

Li, Y., & Zhang, M. (2016). Cumulus over the Tibetan Plateau in the Summer Based on CloudSat-CALIPSO Data. Journal of Climate, 29 (3):1219-1230; 10.1175/JCLI-D-15-0492.1 FEB 2016.

Chapman, D. D., Feldheim, K.A., Papastamatiou, Y., Hueter, R.H. There and Back Again: A review of residency and return migrations in sharks, with implications for population structure and management. Annual Reviews in Marine Science (Available online in advance of publication).

Ashe, J., Feldheim, K.A., Fields, A., Brooks, E.J., Skomal, G., Gruber, S.H., Chapman, D. D. (In Press). Local population structure and context-dependent isolation by distance in a large coastal shark. Marine Ecology Progress Series.

Kessel, S.T., Chapman, D. D., Franks, B. R., Gedamke, T., Gruber, S. H., Newman, M.J., White, E. R., Perkins, R. G. (In Press). Predictable temperature regulated residency, movement and migration in a large, highly-mobile marine predator. Marine Ecology Progress Series.

Alpert, P. A. & Knopf, D. A. (2016). Analysis of isothermal and cooling-rate-dependent immersion freezing by a unifying stochastic ice nucleation model, Atmospheric Chemistry and Physics 16 (4), 2083-2107

Stubler, A. D., A. K. Stevens and B. J. Peterson. 2016. Using community-wide recruitment and succession patterns to assess sediment stress on Jamaican coral reefs. Journal of Experimental Marine Biology and Ecology 474: 29-38.

Giner, J. L., Ceballos, H., Tang, Y. Z., & Gobler, C. J. (2016). Sterols and Fatty Acids of the Harmful Dinoflagellate Cochlodinium polykrikoides. Chemistry & Biodiversity, 13(2), 249-252.

Espinosa, E. P., Koller, A., & Allam, B. (2016). Proteomic characterization of mucosal secretions in the eastern oyster, Crassostrea virginica. Journal of proteomics, 132, 63-76. DOI information: 10.1016/j.jprot.2015.11.018

Baines, S.B., X. Chen, S. Vogt, N.S. Fisher, B.S. Twining, and M.R. Landry. In press. Elemental content of single-celled plankton in the Costa Rica Upwelling Dome and mineral limitation of mesozooplankton. Journal of Plankton Research

Baines, S.B., X. Chen, B.S. Twining, N.S. Fisher, and M.R. Landry. In press. Factors affecting Fe and Zn contents of mesozooplankton from the Costa Rica Dome. Journal of Plankton Research

Martinez, C.M., F.J. Rohlf and M.G. Frisk (In Press). Sexual dimorphism in sister species of Leucoraja skate and its relationship to reproductive strategy and life history. Evolution & Development.

Li, H., & Colle, B. A. 2015: Future Changes in Convective Storm Days over the Northeastern United States Using Linear Discriminant Analysis Applied to CMIP5 Predictions. J. Climate. doi: http://dx.doi.org/10.1175/JCLI-D-14-00831.1.

Colle, B. A., Sienkiewicz, M. J., Archer, C., Veron, D., Veron, F., Kempton, W., & Mak, J. E. (2016). Improving the mapping and prediction of offshore wind resources (IMPOWR): Experimental overview and first results. Bulletin of the American Meteorological Society, 97(8), 1377-1390.

Pascal, L., Maire, O., Volkenborn, N., Lecroart, P., Bichon, S., de Montaudouin, X., … & Deflandre, B. (2016). Influence of the mud shrimp Upogebia pusilla (Decapoda: Gebiidea) on solute and porewater exchanges in an intertidal seagrass (Zostera noltei) meadow of Arcachon Bay: An experimental assessment. Journal of Experimental Marine Biology and Ecology, 477, 69-79.

Dunton, K. J., Jordaan, A., Secor, D. H., Martinez, C. M., Kehler, T., Hattala, K. A., … & Frisk, M. G. (2016). Age and Growth of Atlantic Sturgeon in the New York Bight. North American Journal of Fisheries Management, 36(1), 62-73.

Trammell, J. H., Jiang, X., Li, L., Kao, A., Zhang, G. J., Chang, E. K., & Yung, Y. (2016). Temporal and Spatial Variability of Precipitation from Observation and Model. Journal of Climate, (2016).

Espinosa, E. P., Cerrato, R. M., Wikfors, G. H., & Allam, B. (2016). Modeling food choice in the two suspension-feeding bivalves, Crassostrea virginica and Mytilus edulis. Marine Biology, 163(2), 1-13.

Martinez, C. M., Rohlf, F. J., & Frisk, M. G. (2016). Re‐evaluation of batoid pectoral morphology reveals novel patterns of diversity among major lineages. Journal of morphology, 277(4), 482-493.

Erickson, M. J., Charney, J. J., & Colle, B. A. (2015). Development of a Fire Weather Index Using Meteorological Observations within the Northeast United States. Journal of Applied Meteorology and Climatology, (2015).

Cuesta, F., Muriel, P., Llambi, L.D., Halloy, S., Aguirre, N., Beck, S., Carilla, J., Menses, R.I., Cuello, S., Grau, A., Gamez, L., Irazabel, J., Jacome, J., Jaramillo, R., Ramirez, L., Samaniego, N., Suarez-Duque, D., Thompson, N., Tupuachi, A., Viñas, P., Yager, K., Becerra, M., Pauli, H., Gosling, W. (2016) Latitudinal and altitudinal patterns of plant community diversity on mountain summits across the tropical Andes. Ecography

Wang, X. H., Wang, D. P., Sun, Z., He, Z., Liu, H., Guan, W., … & Bao, X. (2016). International scientists discuss impact on China’s estuarine and coastal environment by intensive anthropogenic activities–The 2nd workshop on sediment dynamics of muddy coasts and estuaries: Physics, biology and their interactions, Zhoushan, China, 23–26 October, 2015. Estuarine, Coastal and Shelf Science, 168, ii-iii.

Espinosa, E. P., Koller, A., & Allam, B. (2016). Proteomic characterization of mucosal secretions in the eastern oyster, Crassostrea virginica. Journal of proteomics, 132, 63-76.

Wang, K., Espinosa, E. P., Tanguy, A., & Allam, B. (2016). Alterations of the immune transcriptome in resistant and susceptible hard clams (Mercenaria mercenaria) in response to Quahog Parasite Unknown (QPX) and temperature. Fish & shellfish immunology, 49, 163-176.

Stubler, A. D., Stevens, A. K., & Peterson, B. J. (2016). Using community-wide recruitment and succession patterns to assess sediment stress on Jamaican coral reefs. Journal of Experimental Marine Biology and Ecology,474, 29-38.

Martinez, C. M., Rohlf, F. J. and Frisk, M. G. (2016), Sexual dimorphism in sister species of Leucoraja skate and its relationship to reproductive strategy and life history. Evolution & Development. doi: 10.1111/ede.12175

Pochron, S. (2016) Monkeys In The Garden Irven DeVore and the Revolution in the Science of Social Behavior. Smashwords.

Pochron, S. (2016) Monkeys In The Garden Irven DeVore and the Revolution in the Science of Social Behavior. Smashwords.

Rider, Tara. The Once and Future Queen: The Imagining and Reimagining of Ireland. 2016. New Trails and Beaten Paths in Celtic Studies.

Tang, S., Zhang, M., & Xie, S. (2016). An ensemble constrained variational analysis of atmospheric forcing data and its application to evaluate clouds in CAM5. Journal of Geophysical Research: Atmospheres, 121(1), 33-48.

Yee, A. K., & Padilla, D. K. (2015). Allometric Scaling of the Radula in the Atlantic Slippersnail Crepidula fornicata. Journal of Shellfish Research, 34(3), 903-907.

Bretherton, C. S., & Khairoutdinov, M. F. (2015). Convective self‐aggregation feedbacks in near‐global cloud‐resolving simulations of an aquaplanet. Journal of Advances in Modeling Earth Systems.

Supinie, T. A., Jung, Y., Xue, M., Stensrud, D. J., French, M. M., & Bluestein, H. B. (2015). Impact of VORTEX2 Observations on Analyses and Forecasts of the 5 June 2009 Goshen County, Wyoming, Supercell. Monthly Weather Review, (2015).

Bokuniewicz, H., Cochran, J. K., Garcia-Orellana, J., Rodellas, V., Daniel, J. W., & Heilbrun, C. (2015). Intertidal percolation through beach sands as a source of 224,223 Ra to Long Island Sound, New York, and Connecticut, United States. Journal of Marine Research, 73(5), 123-140.

Baumann, H., Wells, R. J. D., Rooker, J. R., Zhang, S., Baumann, Z., Madigan, D. J., … & Fisher, N. S. (2015). Combining otolith microstructure and trace elemental analyses to infer the arrival of juvenile Pacific bluefin tuna in the California current ecosystem. ICES Journal of Marine Science: Journal du Conseil, 72(7), 2128-2138.

Allam, B., and Raftos, D., Immune responses to infectious diseases in bivalves, Journal of Invertebrate Pathology 131: 121-136, ISSN 0022-2011,http://dx.doi.org/10.1016/j.jip.2015.05.005.

Allam, B., & Espinosa, P. E. (2015, April). The multiple, central, roles of mucosal secretions in marine bivalves. In INTEGRATIVE AND COMPARATIVE BIOLOGY (Vol. 55, pp. E4-E4). JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA: OXFORD UNIV PRESS INC.

McCann, M. J., & Padilla, D. K. (2015). Effects of a patchy food environment across life history stages. Journal of Experimental Marine Biology and Ecology, 472, 135-141.

Alpert, P. A., & Knopf, D. A. (2015). Analysis of isothermal and cooling rate dependent immersion freezing by a unifying stochastic ice nucleation model. Atmospheric Chemistry and Physics Discussions, 15(9), 13109-13166.

Fritts, D. C., Wang, L., Geller, M. A., Lawrence, D. A., Werne, J., & Balsley, B. B. (2015). Numerical Modeling of Multi-Scale Dynamics at a High Reynolds Number: Instabilities, Turbulence, and an Assessment of Ozmidov and Thorpe Scales. Journal of the Atmospheric Sciences, (2015).

Baines, S. B., Chen, X., Twining, B. S., Fisher, N. S., & Landry, M. R. (2015). Factors affecting Fe and Zn contents of mesozooplankton from the Costa Rica Dome. Journal of Plankton Research, fbv098.

Khairoutdinov, M., & Zhou, X. (2015, April). Changes in sub-daily precipitation extremes in a global climate model with super-parameterization under CO2 warming. In EGU General Assembly Conference Abstracts (Vol. 17, p. 7931).

Gribble, M. O., Karimi, R., Feingold, B. J., Nyland, J. F., O’Hara, T. M., Gladyshev, M. I., & Chen, C. Y. (2015). Mercury, selenium and fish oils in marine food webs and implications for human health. Journal of the Marine Biological Association of the United Kingdom, 1-17.

Zhou, X-H, D-P. Wang, and D. Chen, 2015b. Validating satellite altimeter measurements of internal tides with long-term TAO/TRITON buoy observations at 2oS-156oE. Geophy. Res. Lett., 42, doi:10.1002/2015GL063669.

Wang L; Han J, Zhu Y, Zhou R, Jaye C, Liu H, Li Z-Q, Taylor G, Fischer D, Appenzelle, J, Wong SS. 2015. Probing the dependence of electron transfer on size and coverage in carbon nanotube-quantum dot heterostructures. J Phys Chem 119: 26327–26338

Chao Ye, Weihua Qiao, Xiaobin Yu, Xiaojun Ji, He Huang, J. L. Collier, Liming Liu. 2015. Reconstruction and analysis of the genome-scale metabolic model ofschizochytrium limacinum SR21 for docosahexaenoic acid production. BMC Genomics 16 :799 (11pp). DOI 10.1186/s12864-015-2042-y

Mars Brisbin M, McElroy A, Pales Espinosa E, Allam B. 2015. Antimicrobial activity in the cuticle of the American lobster, Homarus americanus. Fish and Shellfish Immunology. 44: 542-546.

Lin, Yanluan Lin, Ming Zhao and Minghua Zhang, 2015: Tropical cyclone rainfall area controlled by relative sea surface temperature, Nature Communications 6, 6591m doi:10.1038/ncomms7591

Ridley, H.E., Y. Asmerom, J.U.L. Baldini, S.F.M. Breitenbach, V.V. Aquino, K.M. Prufer, Brendan J. Culleton, V. Polyak, F.A. Lechleitner, D.J. Kennett, M. Zhang, N. Marwan, C.G. Macpherson, L.M. Baldini, T. Xiao, J.L. Peterkin, J. Awe, G.H. Haug, 2015: Aerosol forcing of the position of the intertropical convergence zone since AD 1550. Nat. Geosci., 8 (2015)http://dx.doi.org/10.1038/ngeo2353

Zhang, M., 2015. Coupled Ocean-Atmosphere Models: Physical Processes. P144-152, In: Gerald R.North (editor-in-chief), John Pyle and Fuqing Zhang (editors). Encyclopedia of Atmospheric Sciences, 2nd edition, Vol 4, pp. 144–152. ISBN: 9780123822253, 2998pp, Copyright © 2015 Elsevier Ltd.

Walcker, R., E. J. Anthony, C. Cassou, R.C. Aller, A. Gardel, C. Proisy, J.-M. Martinez, and F. Fromard, 2015, Fluctuations in the extent of mangroves driven by multi-decadal changes in North Atlantic waves. J. Biogeogr., 42, 2209-2219.

A. J. Illingworth, H. W. Barker, A. Beljaars, M. Ceccaldi, H. Chepfer, N. Clerbaux, J. Cole, J. Delanoë, C. Domenech, D. P. Donovan, S. Fukuda, M. Hirakata, R. J. Hogan, A. Huenerbein, P. Kollias, T. Kubota, T. Nakajima, T. Y. Nakajima, T. Nishizawa, Y. Ohno, H. Okamoto, R. Oki, K. Sato, M. Satoh, M. W. Shephard, A. Velázquez-Blázquez, U. Wandinger, T. Wehr, and G.-J. van Zadelhoff, (2015), The EarthCARE Satellite: The Next Step Forward in Global Measurements of Clouds, Aerosols, Precipitation, and Radiation. Bull. Amer. Meteor. Soc., 96, 1311–1332. doi: http://dx.doi.org/10.1175/BAMS-D-12-00227.1

Robert Wood, Matthew Wyant, Christopher S. Bretherton, Jasmine Rémillard, Pavlos Kollias, Jennifer Fletcher, Jayson Stemmler, Simone de Szoeke, Sandra Yuter, Matthew Miller, David Mechem, George Tselioudis, J. Christine Chiu, Julian A. L. Mann, Ewan J. O’Connor, Robin J. Hogan, Xiquan Dong, Mark Miller, Virendra Ghate, Anne Jefferson, Qilong Min, Patrick Minnis, Rabindra Palikonda, Bruce Albrecht, Ed Luke, Cecile Hannay, and Yanluan Lin, (2015), Clouds, Aerosols, and Precipitation in the Marine Boundary Layer: An Arm Mobile Facility Deployment.Bull. Amer. Meteor. Soc., 96, 419–440. doi: http://dx.doi.org/10.1175/BAMS-D-13-00180.1

Chandra, A., Zhang, C., Kollias, P., Matrosov, S., and Szyrmer, W, (2015), Automated rain rate estimates using the Ka-band ARM zenith radar (KAZR), Atmos. Meas. Tech., 8, 3685-3699, doi:10.5194/amt-8-3685-2015.

Battaglia, A. and P. Kollias, (2015), Error Analysis of a Conceptual Cloud Doppler Stereoradar with Polarization Diversity for Better Understanding Space Applications. J. Atmos. Oceanic Technol., 32, 1298–1319. doi: http://dx.doi.org/10.1175/JTECH-D-14-00015.1

Maximilian Maahn, Ulrich Löhnert, Pavlos Kollias, Robert C. Jackson, and Greg M. McFarquhar, (2015), Developing and Evaluating Ice Cloud Parameterizations for Forward Modeling of Radar Moments Using in situ Aircraft Observations. J. Atmos. Oceanic Technol., 32, 880–903. doi: 10.1175/JTECH-D-14-00112.1

Gail Skofronick-Jackson, David Hudak, Walter Petersen, Stephen W. Nesbitt, V. Chandrasekar, Stephen Durden, Kirstin J. Gleicher, Gwo-Jong Huang, Paul Joe, Pavlos Kollias, Kimberly A. Reed, Mathew R. Schwaller, Ronald Stewart, Simone Tanelli, Ali Tokay, James R. Wang, and Mengistu Wolde, (2015), Global Precipitation Measurement Cold Season Precipitation Experiment (GCPEX): For Measurement’s Sake, Let It Snow. Bull. Amer. Meteor. Soc., 96, 1719–1741. doi: http://dx.doi.org/10.1175/BAMS-D-13-00262.1

Mechem, D. B., Giangrande, S. E., Wittman, C. S., Borque, P., Toto, T. and Kollias, P. (2015), Insights from modeling and observational evaluation of a precipitating continental cumulus event observed during the MC3E field campaign. J. Geophys. Res. Atmos., 120, 1980–1995. doi: 10.1002/2014JD022255.

Gledhill, D.K., M.M. White, J. Salisbury, H. Thomas, I. Mlsna, M. Liebman, B. Mook, J. Grear, A.C. Candelmo, R.C. Chambers, C.J. Gobler, C.W. Hunt, A.L. King, N.N. Price, S.R. Signorini, E. Stancioff, C. Stymiest, R.A. Wahle, J.D. Waller, N.D. Rebuck, Z.A. Wang, T.L. Capson, J.R. Morrison, S.R. Cooley, and S.C. Doney. (2015). Ocean and coastal acidification off New England and Nova Scotia. Oceanography 28(2), 182–197, http://dx.doi.org/10.5670/oceanog.2015.41

Feng, S., Li, Z., Liu, Y., Lin, W., Zhang, M., Toto, T., … & Endo, S. (2015). Development of fine‐resolution analyses and expanded large‐scale forcing properties: 2. Scale awareness and application to single‐column model experiments. Journal of Geophysical Research: Atmospheres.

Michael J McCann and Dianna K Padilla 2015. Effects of a patchy food environment across life history stages. Journal of Experimental Marine Biology and Ecology 472: 135-141.

Alexander Y. Karatayev, Demetrio Boltovskoy, Lyubov Burlakova and Dianna K. Padilla 2015. Parallels and contrasts between Limnoperna fortunei and species of Dreissena. In: Limnoperna fortunei: the ecology, distribution and control of a swiftly spreading invasive fouling mussel, Demetrio Boltovskoy, Editor. Springer.

Alexander Y. Karatayev, Lyubov E. Burlakova, Sergey E. Mastitsky, and Dianna K. Padilla 2015. Predicting the spread of aquatic invaders: insight from 200 years of invasion by zebra mussels. Ecological Applications 25: 430-440.

Alexander Y. Karatayev, Lyubov E. Burlakova and Dianna K. Padilla. 2015. Zebra versus quagga mussels: a review of their spread, population dynamics, and ecosystem impacts. Hydrobiologia 746: 97-112.

Chapman, D. D., Feldheim, K. A., Papastamatiou, Y. P., & Hueter, R. E. (2015). There and Back Again: A Review of Residency and Return Migrations in Sharks, with Implications for Population Structure and Management. Annual review of marine science, 7, 547-570.

Ashe, J. L., Feldheim, K. A., Fields, A. T., Reyier, E. A., Brooks, E. J., O’Connell, M. T., … & Chapman, D. D. (2015). Local population structure and context-dependent isolation by distance in a large coastal shark. Mar Ecol Prog Ser, 520, 203-216.

Watanabe, Y. Y., Goldman, K. J., Caselle, J. E., Chapman, D. D., & Papastamatiou, Y. P. (2015). Comparative analyses of animal-tracking data reveal ecological significance of endothermy in fishes. Proceedings of the National Academy of Sciences, 201500316.

Brooks, E. J., Brooks, A. M., Williams, S., Jordan, L. K., Abercrombie, D., Chapman, D. D., … & Grubbs, R. D. (2015). First description of deep-water elasmobranch assemblages in the Exuma Sound, The Bahamas. Deep Sea Research Part II: Topical Studies in Oceanography, 115, 81-91.

Fields, A. T., Feldheim, K. A., Poulakis, G. R., & Chapman, D. D. (2015). Facultative parthenogenesis in a critically endangered wild vertebrate. Current Biology, 25(11), R446-R447.

Tettelbach, S. T., B. J. Peterson, J. M. Carroll, B. T. Furman, S. W. T. Hughes, J. Havelin, J. R. Europe, D. M. Bonal, A. J. Weinstock and C. F. Smith. 2015. Aspiring to an Alternative Stable State: Rebuilding of Bay Scallop Populations and Fisheries Following Intensive Restoration. Marine Ecology Progress Series 529: 121-136.

Berry, D. L., J. A. Goleski, F. Koch, C. C. Wall, B. J. Peterson, O. R. Anderson and C. J. Gobler. 2015. Shifts in Cyanobacterial Strain Dominance during Onset of Harmful Algal Blooms in Florida Bay, USA. Molecular Ecology 70: 361-371.

Furman, B. T., L. J. Jackson, E. Bricker and B. J. Peterson. 2015. Sexual recruitment in Zostera marina: a patch to landscape-scale investigation. Limnology and Oceanography 60(2): 584-599.

Carroll, J. M., L. L. Jackson and B. J. Peterson. 2015. The effect of increasing habitat complexity on bay scallop survival in the presence of different decapod crustacean predators. Estuaries and Coasts 38: 1569-1579

Stubler, A. D., A. R. Duckworth and B. J. Peterson. 2015. Sedimentation affects sponge abundance, diversity and distribution on Jamaican coral reefs. Marine Pollution Bulletin 96: 261-270.

Stubler, A. D., B. T. Furman and B. J. Peterson. 2015. Sponge erosion under acidification and warming scenarios: differential impacts on living and dead coral. Global Change Biology 21(11): 4006-4020.

Furman, B. T. and B. J. Peterson. 2015. Sexual Recruitment in Zostera marina: Progress toward a Predictive Model. PLoS ONE 10(9): e0138206.

Trathan, P. N., P. García-Borboroglu, D. Boersma, C.-A. Bost, R. J. M. Crawford, G. T. Crossin, R. J. Cuthbert, P. Dann, L. S. Davis, S. De la Puente, U. Ellenberg, H.J. Lynch, T. Mattern, K. Pütz, P. J. Seddon, W. Trivelpiece, B. Wienecke. 2015. Assessing human impacts on marine systems, especially upon penguin species: how much do we care? Conservation Biology 29(1): 31-41.

Casanovas, P.V., R. Naveen, S. Forrest, J. Poncet, and H.J. Lynch. 2015. A comprehensive coastal seabird survey maps out the front lines of ecological change on the Western Antarctic Peninsula. Polar Biology 38: 927-940.

LaRue, M., G. Kooyman, H.J. Lynch, and P. Fretwell. 2015. Emigration in emperor penguins: Implications for interpretation of long-term studies. Ecography 38: 114-120.

Zhou, X., P. Kollias and E. Lewis, (2015), Clouds, Precipitation, and Marine Boundary Layer Structure during the MAGIC Field Campaign. J. Climate, 28, 2420–2442. doi: http://dx.doi.org/10.1175/JCLI-D-14-00320.1

Zermeno, D., C. Zhang, P. Kollias and H. Kalesse, (2015), Shallow Cloud Moistening in MJO and non-MJO Large-Scale Convective Events over the ARM Manus Site. J. Atmos. Sciences, doi: http://dx.doi.org/10.1175/JAS-D-14-0322.1

Lamer, K., P. Kollias, and L. Nuijens (2015), Observations of the variability of shallow trade wind cumulus cloudiness and mass flux. J. Geophys. Res. Atmos., 120, 6161–6178. doi: 10.1002/2014JD022950.

Marcus van Lier-Walqui, Ann Fridlind, Andrew Ackerman, Scott Collis, Jonathan Helmus, Donald MacGorman Kirk North, Pavlos Kollias and Derek Posselt, (2015), Polarimetric radar signatures of deep convection: characteristics of KDP columns observed during MC3E. Monthly Weather Review 2015; e-View doi: 10.1175/MWR-D-15-0100.1

Jiwen Fan, Yi-Chin Liu, Kuan-Man Xu, Kirk North, Scott Collis, Xiquan Dong, Guang J. Zhang, Qian Chen, Kollias Pavlos, and Steven J. Ghan, (2015), Improving Representation of Convective Transport for Scale-Aware Parameterization – Part I: Convection and Cloud Properties Simulated with Spectral-Bin and Bulk Microphysics. Accepted, Journal of Geophysical Research – Atmospheres

Kneifel, S., A.von Lerber, J. Tiira, D. Moisseev, P. Kollias, and J. Leinonen (2015), Observed relations between snowfall microphysics and triple-frequency radar measurements. J. Geophys. Res. Atmos., 120, 6034–6055. doi:10.1002/2015JD023156.

Jensen, M., et al., (2015), The Midlatitude Continental Convective Clouds Experiment (MC3E). Accepted to the Bulletin of the American Meteorological Society

Gownaris NJ, Pikitch EK, Ojwang WO, Michener R, Kaufman L (2015) Predicting Species’ Vulnerability in a Massively Perturbed System: The Fishes of Lake Turkana, Kenya. PLoS ONE 10(5): e0127027. doi:10.1371/journal.pone.0127027

Lin, W., Liu, Y., Vogelmann, A. M., Fridlind, A., Endo, S., Song, H., … & Zhang, M. (2015). RACORO Continental Boundary Layer Cloud Investigations. Part III: Separation of Parameterization Biases in Single‐Column Model CAM5 Simulations of Shallow Cumulus. Journal of Geophysical Research: Atmospheres.

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Dheilly NM, Adema C, Raftos DA, Gourbal B, Grunau C, Du Pasquier L. (2014). No more non-model species : the promise of Next Generation Sequencing for comparative immunology. Journal of Developmental and Comparative Immunology. 45(1): 56-66

Vidal-Dupiol J, Dheilly NM, Rondon R, Grunau C, Cosseau C, Smith K, Freitag M, Adjeroud M, Mitta G. (2014). Thermal Stress Triggers Broad Pocillopora damicornis Transcriptomic Remodeling, while Vibrio coralliilyticus Infection Induces a More Targeted Immuno-Suppression Response. Plos One 9(9): e107672

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Tang, Y. Z., Kang, Y., Berry, D., & Gobler, C. J. (2014). The ability of the red macroalga, Porphyra purpurea (Rhodophyceae) to inhibit the proliferation of seven common harmful microalgae. Journal of Applied Phycology, 27(1), 531-544.

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Nalluria D., Baumann Z., Abercrombie D.L., Chapman, D. D., Hammerschmidt, C.R., Fisher, N. (2014). Methylmercury in dried shark fins and shark fin soup from American restaurants. Science of the Total Environment 496, 644-648

K.N. Becker and J.D. Warren (2014). Material properties of Northeast Pacic zooplank-ton.” ICES Journal of Marine Science 71(9), 2550-2563. doi: 10.1093/icesjms/fsu109

Engel, A., C. Cisternas Novoa, M. Wurst, S. Endres, T. Tang, M. Schartau and C. Lee (2014). No detectable effect of CO2 on elemental stoichiometry of Emiliania huxleyi in nutrient-limited, acclimated continuous cultures. Marine Ecology Progress Series, 507: 15-30, doi.org/10.3354/meps10824.

Cisternas Novoa, C., C. Lee, A. Engel (2014). A semi-quantitative spectrophotometric, dye-binding assay for determination of Coomassie Blue stainable particles. Limnology and Oceanography: Methods 12(8): 604-616, doi.org/10.4319/lom.2014.12.604.

Tang, T., C. Lee, and K. Kisslinger (2014). Silicate deposition on decomposing cyanobacteria as a source of particulate silicate in the ocean. Nature Communications, 5: 4143, doi.org/10.1038/ncomms5143.

Wurch, L. L., Gobler, C.J., & Dyhrman, S. T. (2014). Expression of a xanthine permease and phosphate transporter in cultures and field populations of the harmful alga Aureococcus anophagefferens: tracking nutritional deficiency during brown tides. Environmental microbiology. Chicago

Keeling PJ, Burki F, Gobler CJ, and 65 others. (2014). The functional diversity of eukaryotic life in the oceans through transcriptome sequencing. PLOS Biology, 12 : e1001889, DOI: 10.1371/journal.pbio.1001889

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Wallace, R. B., & Gobler, C. J. (2014). Factors Controlling Blooms of Microalgae and Macroalgae (Ulva rigida) in a Eutrophic, Urban Estuary: Jamaica Bay, NY, USA. Estuaries and Coasts, 1-15.

Gobler CJ, Talmage SC. (2014). Physiological response and resilience of early life stage Eastern oysters (Crassostrea virginica) to past, present, and future ocean acidification. Conservation Physiology, 2, 1-15

Dheilly NM (2014). Holobiont-holobiont interactions: redefining host-parasite interactions. Plos Path. 10(7): e1004093

Young, W. R., and C. L. Wolfe, 2014: Generation of ripples by shear-flow instability. Journal of Fluid Mechanics, 739, 276–307, doi: 10.1017/jfm.2013.617.

Wolfe, C. L., Cessi, P., 2014: Salt Feedback in the Adiabatic Overturning Circulation. J. Phys. Oceanogr., 44, 1175-1194. doi: http://dx.doi.org/10.1175/JPO-D-13-0154.1

Wolfe, C. L., 2014: Approximations to the ocean’s residual circulation in arbitrary tracer coordinates. Ocean Modelling, 75, 20–35, doi: 10.1016/j.ocemod.2013.12.004.

Knopf, D. A., Alpert, P. A., Wang, B., O’Brien, R. E., Kelly, S. T., Laskin, A., GIlles, M.K. & Moffet, R. C. (2014). Microspectroscopic imaging and characterization of individually identified ice nucleating particles from a case field study. Journal of Geophysical Research: Atmospheres, 119(17), 10-365.

JH Slade, DA Knopf (2014). Multiphase OH oxidation kinetics of organic aerosol: The role of particle phase state and relative humidity. Geophysical Research Letters 41 (14), 5297-5306.

Sanchez-Franks, A., C. N. Flagg, & T. Rossby, (2014). A comparison of transport and position between the Gulf Stream east of Cape Hatteras and the Florida Current, Journal of Marine Research, 72, 291–306.

Rossby, T., Flagg, C. N., Donohue, K., Sanchez-Franks, A., & Lillibridge, J. (2014). On the long-term stability of Gulf Stream transport based on 20 years of direct measurements. Geophysical Research Letters.

Childers, K. H., Flagg, C. N., & Rossby, T. (2014). Direct velocity observations of volume flux between Iceland and the Shetland Islands. Journal of Geophysical Research: Oceans, 119(9), 5934-5944.

D. Nalluri, Z. Baumann, D.L. Abercrombie, D.D. Chapman, C.R. Hammerschmidt, and N.S. Fisher. 2014. Methylmercury in dried shark fins and shark fin soup from American restaurants. Science of the Total Environment 496: 644-648.

Madigan, D.J., Z. Baumann, A.B. Carlisle, D.K. Hoen, B.N. Popp, H. Dewar, O.E. Snodgrass, B.A Block, and N.S. Fisher. 2014. Reconstructing transoceanic migration patterns of Pacific bluefin tuna using a chemical tracer toolbox. Ecology 95: 1674-1683.

Karimi, R., S. Silbernagel, N.S. Fisher, and J.R. Meliker. 2014. Elevated blood Hg at recommended seafood consumption rates in adult seafood consumers. International Journal of Hygiene and Environmental Health 217: 758-764.

Karimi, R., N.S. Fisher, and J.R. Meliker. 2014. Mercury-nutrient signatures in seafood and in the blood of avid seafood consumers. Science of the Total Environment 496: 636-643.

Dutton, J., and N.S. Fisher. 2014. Modeling metal bioaccumulation and tissue distribution in killifish (Fundulus heteroclitus) in three contaminated estuaries. Environmental Toxicology and Chemistry 33: 89-101.

Brown, E. E., Baumann, H., & Conover, D. O. 2014. Temperature and photoperiod effects on sex determination in a fish. Journal of Experimental Marine Biology and Ecology, 461: 39-43.

Maloney, E. D., Colle, B. C. and Coauthors, 2014: North American Climate in CMIP5 Experiments: Part III: Assessment of Twenty-First-Century Projections*. J. Climate, 27, 2230-2270. doi: http://dx.doi.org/10.1175/JCLI-D-13-00273.1.

Hodrefe, C, P. Doraiswamy, B. Colle, K. Demerjian, W. Hao, M. Erickson, M. Souders, and J-Y Ku, 2014: Meteorology, Emissions, and Grid Resolution: Effects on Discrete and Probabilistic Model Performance. In: D. Steyn, P. Builtjes, R. Timmermans (eds.): Air Pollution and Modeling and Its Application XXII, NARA Science for Peace and Security Series C: Environmental Security, 493-497. Springer Netherlands.

Wuebbles, D., Meehl, G., Hayhoe, K., Karl, T. R., Kunkel, K., Santer, B., Colle, B. C., … & Sun, L. 2014: CMIP5 climate model analyses: Climate extremes in the United States. Bulletin of the American Meteorological Society, 95(4), 571-583.

Colle, B. A., Stark, D. and Yuter, S.E. 2014: Surface Microphysical Observations within East Coast Winter Storms on Long Island, New York. Mon. Wea. Rev., 142, 3126-3146. doi: http://dx.doi.org/10.1175/MWR-D-14-00035.1

Wilson, R. E., Bratton, S. D., Wang, J., & Colle, B. A. 2014: Evidence for Directional Wind Response in Controlling Inter-annual Variations in Duration and Areal Extent of Summertime Hypoxia in Western Long Island Sound. Estuaries and Coasts, 1-9.

Picca, J.C., D.M. Schultz, B. A. Colle, S. Ganetis, D.R. Novak, and M. Sienkiewicz, 2014: The value of dual-polarization radar in diagnosing the complex microphysical evolution of an intense snowband. Bull. Meteor. Soc., 95, 1825-1834.

Li, H., and B.A. Colle, 2014: Multidecadal changes in the frequency and ambient conditions of warm season convective storms over the northeastern U.S. J. Climate, 27, 7285-7300.

Colle, B.A. 2014: Cold Air Damming. In: Gerald R. North (editor-in-chief), John Pyle and Fuqing Zhang (editors). Encyclopedia of Atmospheric Sciences, 2nd edition, Vol 4, pp. 62–68.

Rountos, K.J., Tang, Y.Z., Cerrato, R.M., Gobler, C.J., Pikitch, E.K. (2014). Toxicity of the harmful dinoflagellate Cochlodinium polykrikoides to early life stages of three estuarine forage fish. Mar Ecol Prog Ser 505: 81-94

McCauley, M. M., Cerrato, R. M., Sclafani, M., & Frisk, M. G. (2014). Diel Behavior in White Perch Revealed using Acoustic Telemetry. Transactions of the American Fisheries Society, 143(5): 1330-1340.

McNamara, M.E., D.J. Lonsdale, and R.M. Cerrato (2014). Role of eutrophication in structuring planktonic communities in the presence of the ctenophore Mnemiopsis leidyi. Mar. Ecol. Prog. Ser. 510: 151-165

Collier, J.L., S.P. Fitzgerald, L.A. Hice, M.G. Frisk, and A.E. McElroy (2014) A New PCR-Based Method Shows That Blue Crabs (Callinectes sapidus (Rathbun)) Consume Winter Flounder (Pseudopleuronectes americanus (Walbaum)). Plos One 9.

Sagarese, S.R., M.G. Frisk, T.J. Miller, K.A. Sosebee, J.A. Musick, and P.J. Rago (2014) Influence of environmental, spatial, and ontogenetic variables on habitat selection and management of spiny dogfish in the Northeast (US) shelf large marine ecosystem. Canadian Journal of Fisheries and Aquatic Sciences 71(4), 567-580.

Skyler R. Sagarese, Michael G. Frisk, Robert M. Cerrato, Kathy A. Sosebee, John A. Musick, and Paul J. Rago (2014). Application of generalized additive models to examine ontogenetic and seasonal distributions of spiny dogfish (Squalus acanthias) in the Northeast (US) shelf large marine ecosystem. Can J. Fish. Aq. Sci. 71: 847-877.

Pycke, B. F., Roll, I. B., Brownawell, B. J., Kinney, C. A., Furlong, E. T., Kolpin, D. W., & Halden, R. U. (2014). Transformation Products and Human Metabolites of Triclocarban and Triclosan in Sewage Sludge Across the United States. Environmental science & technology, 48(14), 7881-7890.

Lara-Martín, P. A., González-Mazo, E., Petrovic, M., Barceló, D., & Brownawell, B. J. (2014). Occurrence, distribution and partitioning of nonionic surfactants and pharmaceuticals in the urbanized Long Island Sound Estuary (NY). Marine pollution bulletin.

Traverso-Soto, J. M., Brownawell, B. J., González-Mazo, E., & Lara-Martín, P. A. (2014). Partitioning of alcohol ethoxylates and polyethylene glycols in the marine environment: Field samplings vs laboratory experiments. Science of the Total Environment, 490, 671-678.

Yuan, W., Geller, M. A. and Love, P. T. (2014), ENSO influence on QBO modulations of the tropical tropopause. Q.J.R. Meteorol. Soc., 140: 1670-1676. doi: 10.1002/qj.2247

Frisk, M.G., Jordaan, A., Miller, T.J. (2014) Moving beyond the current paradigm in marine population connectivity: are adults the missing link? Fish and Fisheries 15, 242-254.

Sheffield, J., et al. (including E.K.M. Chang), 2014: Regional Climate Processes and Projections for North America: CMIP3/CMIP5 differences, attribution and outstanding issues. NOAA Technical Report OAR CPO-2. Available at http://docs.lib.noaa.gov/noaa_documents/OAR/CPO/TR_OAR_CPO/CPO-2.pdf.

Maloney, E.D., S.J. Camargo, E. Chang, et al., 2014: North American climate in CMIP5 experiments: Part III: Assessment of twenty-first-century projections, J. Climate, 27, 2230-2270, doi: 10.1175/JCLI-D-13-00273.1.

Feng, J., Liu, P., Chen, W., & Wang, X. (2014). Contrasting Madden–Julian Oscillation activity during various stages of EP and CP El Niños. Atmospheric Science Letters.

Liu, P. (2014). MJO structure associated with the higher-order CEOF modes. Climate Dynamics, 1-12.

Bluestein, Howard B., J. B. Houser, M. M. French, J. C. Snyder, G. D. Emmitt, I. PopStefanija, C. A. Baldi, and R. T. Bluth, (2014). Observations of the boundary layer near tornadoes and in supercells using a mobile, co-located, pulsed Doppler lidar and radar. J. Atmos. Oceanic Technol., 31, 302-325.

French, Michael M., H. B. Bluestein, I. PopStefanija, C. A. Baldi, and R. T. Bluth, (2014). Mobile, phased-array, Doppler radar observations of tornadoes at X band. Mon. Wea. Rev., 142, 1010-1036.

Skinner, Patrick S., C. C. Weiss, M. M. French, H. B. Bluestein, P. M. Markowski, and Y. P. Richardson, (2014). VORTEX2 observations of a low-level mesocyclone with multiple internal rear-flank downdraft momentum surges in the 18 May 2010 Dumas, Texas supercell. Mon. Wea. Rev., 142, 2935-2960.

Dietrich, D. E., Bowman, M. J., Korotenko, K. A., & Bowman, M. H. E. (2014). Oil Spill Risk Management: Modeling Gulf of Mexico Circulation and Oil Dispersal. John Wiley & Sons.

Garcia-Orellana, J., Cochran, J. K., Bokuniewicz, H., Daniel, J. W. R., Rodellas, V., & Heilbrun, C. (2014). Evaluation of 224Ra as a tracer for submarine groundwater discharge in Long Island Sound (NY). Geochimica et Cosmochimica Acta 114, 314-330.

Koch, F., Burson, A., Tang, Y. Z., Collier, J. L., Fisher, N. S., Sañudo-Wilhelmy, S., & Gobler, C. J. (2014). Alteration of plankton communities and biogeochemical cycles by harmful Cochlodinium polykrikoides (Dinophyceae) blooms. Harmful Algae, 33(0), 41-54. doi: http://dx.doi.org/10.1016/j.hal.2014.01.003

Souders, M. B., Colle, B. A., & Chang, E. K. 2014: The Climatology and Characteristics of Rossby Wave Packets Using a Feature-Based Tracking Technique. Monthly Weather Review, 142(10), 3528-3548.

Souders, M.B., B.A. Colle, and E.K.M. Chang, 2014: A description of an automated approach for feature-based tracking of Rossby wave packets. Mon. Wea. Rev., 142, 3505-3527, doi:10.1175/MWR-D-1300317.1.

Chang, E.K.M., 2014: Impacts of background field removal on CMIP5 projected changes in Pacific winter cyclone activity, J. Geophys. Res. Atmos., 119, 4626-4639, doi:10.1002/2013JD020746.

Xia, X.*, and E.K.M. Chang, 2014: Diabatic damping of zonal index variations, J. Atmos. Sci., 71, 3090-3105, doi:10.1175/JAS-D-13-0292.1.

Doherty, O. M., Riemer, N., & Hameed, S. (2014). Role of the convergence zone over West Africa in controlling Saharan mineral dust load and transport in the boreal summer. Tellus B, 66.

Wallace, R. B., Baumann, H., Grear, J. S., Aller, R. C., & Gobler, C. J. (2014). Coastal ocean acidification: The other eutrophication problem. Estuarine, Coastal and Shelf Science.

del Castillo C, Allam B. (2014). A comparative genomics analysis of the T3SS2α pathogenicity island of Vibrio parahaemolyticus. Journal of Shellfish Research 33(2): 550

Wang K, Pales Espinosa E, Allam B. (2014). Effect of “heat shock” treatments on QPX disease in the hard clam, Mercenaria mercenaria. Journal of Shellfish Research 33(2): 661.

Wang K, Del Castillo C, Pales Espinosa E, Allam B. (2014). Clam focal and systemic immune responses to QPX revealed by RNA-Seq technology. Journal of Shellfish Research 33(2): 661.

Rubin E, Pales Espinosa E, Koller A, Allam B. (2014). Extracellular proteins in quahog parasite unknown (QPX) mucoid secretion. Journal of Shellfish Research 33(2): 648.

Rubin E, Tanguy A, Pales Espinosa E, Allam B. (2014). Differential gene expression in quahog parasite unknown (QPX) in response to clam factors and transcriptomic profiling of five QPX isolates. Journal of Shellfish Research 33(2): 647-648.

Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, et al. (2014). The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. PLoS Biology, 12(6), e1001889.

Rosa M, Ward E, Shumway S, Wikfors G, Pales Espinosa E, Allam B. (2014). Examining seasonal shifts in retention efficiency and mucosal composition in the blue mussel Mytilus edulis. Journal of Shellfish Research 33(2): 647.

Allam B., Corre E, Pales Espinosa E. (2014). Pallial mucus of Crassostrea virginica regulates the expression of putative virulence genes of its pathogen Perkinsus marinus. Journal of Shellfish Research 33(2): 586.

Allam, B., Pales Espinosa, E., Tanguy, A., Jeffroy, F., Le Bris, C., Paillard, C. 2014. Transcriptional changes in manila clam (Ruditapes philippinarum) in response to brown ring disease. Fish and Shellfish immunology. 41, 2-11.

Rubin E, Tanguy A, Perrigault M, Pales Espinosa E, Allam B. (2014). Characterization of the transcriptome and temperature-induced differential gene expression of in quahog parasite unknown QPX, the thraustochytrid parasite of hard clams. BMC Genomics 15: 245.

Pales Espinosa E, Koller T, Allam B. (2014). Shotgun proteomic characterization of the pallial mucus of the oyster Crassostrea virginica. Journal of Shellfish Research 33(2): 640.

Dahl S, Barnes D, Allam B. (2014). QPX disease relationships with environmental parameters monitored over a decade in a Raritan Bay (NY) hard clam fishery. Journal of Shellfish Research 33(2): 599-600.

Pales Espinosa E., Allam B. (2014). Food quality and season affect the expression of the mucosal lectin MeML and food sorting abilities in the blue mussel Mytilus edulis. Journal of Shellfish Research 33(2): 639-640.

Pales Espinosa E., Corre E, Allam B. (2014). Pallial mucus of Crassostrea virginica regulates the expression of putative virulence genes of its pathogen Perkinsus marinus. International Journal for Parasitology 44: 305-317.

Beaupré, S. R. (2014). Chapter 6: The isotopic composition of marine DOC, in Biogeochemistry of Marine Dissolved Organic Carbon, 2nd Edition, edited by D. A. Hansell and C. A. Carlson, pp. 335-368, Academic Press, U.K.

Geers, T.M., E.K. Pikitch, M.G. Frisk (In Press-online February 5, 2014). An Original Model of the Northern Gulf of Mexico using Ecopath with Ecosim and its Implications for the Effects of Fishing on Ecosystem Structure and Maturity. Deep Sea Research Part II: Topical Studies in Oceanography.

Newman, E. T. Biography of a Hacienda: Work and Revolution in Rural Mexico. 2014 University of Arizona Press.

Newman, E. T. Biography of a Hacienda: Work and Revolution in Rural Mexico. 2014 University of Arizona Press.

Dietrich, D. E., Bowman, M. J., Korotenko, K. A., & Bowman, M. H. E. The 2010 Deep Water Horizon and 2002 Supertanker Prestige Accidents. Oil Spill Risk Management: Modeling Gulf of Mexico Circulation and Oil Dispersal, 1-8.

Dietrich, D. E., Bowman, M. J., Korotenko, K. A., & Bowman, M. H. E. The 2010 Deep Water Horizon and 2002 Supertanker Prestige Accidents. Oil Spill Risk Management: Modeling Gulf of Mexico Circulation and Oil Dispersal, 1-8.

Berg, L. K., J. D. Fast, J. C. Barnard, S. P. Burton, B. Cairns, D. Chand, J. M. Comstock, S. Dunagan, R. A. Ferrare, C. J. Flynn, J. W. Hair., C. A. Hostetler., J. Hubbe., R. Johnson, E. I. Kassianov, C. D. Kluzek, P. Kollias, K. Lamer, F. Mei, M. A. Miller, J. Michalsky, I. Ortega, R R. Rogers., P. B. Russell, J. Redemann, A. J. Sedlacek III, M. Segal-Rosenheimer, B. Schmid, J. E. Shilling, Y. Shinozuka, S. R. Springston, J. Tomlinson, M. Tyrrell, J. M. Wilson, R. Volkamer, A. Zelenyuk, and C. M. Berkowitz, (2013), The Two-Column Aerosol Project: Phase I Overview and Impact of Elevated Aerosol Layers on Aerosol Optical Depth, Accepted to the Journal of Geophysical Research

Taylor, D. (2013). The Log from the Sea of Cortez: A Poem Series. San Antonio, TX: Wings Press.

Taylor, D. (2013). The Log from the Sea of Cortez: A Poem Series. San Antonio, TX: Wings Press.

Archer, C. L., Colle, B. C., Monache, L., Dvorak, M. J., Lundquist, J., Bailey, B. H., … & Zack, J. 2013: Meteorology for coastal/offshore wind energy in the United States: recommendations and research needs for the next 10 years. Bulletin of the American Meteorological Society.

Okubo, A., & Levin, S. A. (2013). Diffusion and ecological problems: modern perspectives (Vol. 14). Springer Science & Business Media.

Okubo, A., & Levin, S. A. (2013). Diffusion and ecological problems: modern perspectives (Vol. 14). Springer Science & Business Media.

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D. Hill, M.J. Bowman, and J.S. Khinda (eds.). 2012. Storm Surge Barriers to Protect New York City: Against the Deluge, Amer. Soc. Civil Eng., pp. 259.

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Safina, C. 2010. Nina Delmar and the Great Whale Rescue (Illustr. children’s book).

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Aerts, J., D.C. Major, M.J. Bowman, P. Dierke, M.A. Marfai. 2009. Connecting Delta Cities. VU University Press, Amsterdam, pp. 91.

Camhi, M. D., E. K. Pikitch and E. A. Babcock, editors. 2008. Sharks of the Open Ocean: Biology, Fisheries and Conservation. Blackwell Publishing, Oxford, UK. 536 p.

Camhi, M. D., E. K. Pikitch and E. A. Babcock, editors. 2008. Sharks of the Open Ocean: Biology, Fisheries and Conservation. Blackwell Publishing, Oxford, UK. 536 p.

Taylor, D (2008) Praying Up the Sun. San Antonio, TX: Pecan Grove Press

Taylor, D (2008) Praying Up the Sun. San Antonio, TX: Pecan Grove Press

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2016 Publications

by | Jan 1, 2016

Allam, Bassem Liu, Q., Collier, J. L., & Allam, B. (2016). Seasonality of QPX disease in the Raritan Bay (NY) wild hard clam (Mercenaria mercenaria) population. Aquaculture Research. Aller, Josie Aller, Robert Beaupré, Steven Soulet, G., Skinner, L. C., Beaupré,...

2015 Publications

by | Jan 5, 2015

Allam, Bassem Wang, K., Espinosa, E. P., Tanguy, A., & Allam, B. (2015). Alterations of the immune transcriptome in resistant and susceptible hard clams (Mercenaria mercenaria) in response to Quahog Parasite Unknown (QPX) and temperature. Fish & Shellfish...

2014 Publications

by | Jan 10, 2014

Allam, Bassem Rubin, E., Espinosa, E. P., Koller, A., & Allam, B. (2014). Characterization of the secretome of the clam parasite, QPX. International Journal for Parasitology. Raghuvanshi, D. S., Kumari, K., Allam, B. K., & Singh, K. N. (2014). A convenient and...

2013 Publications

by | Jan 10, 2013

Allam, Bassem Allam B. , Carden WE, Ward JE, Ralph G, Winnicki S, Pales Espinosa E. (2013). Early host-pathogen interactions in marine bivalves: Evidence that the alveolate parasite Perkinsus marinus infects through the oyster mantle during rejection of pseudofeces....

2012 Publications

by | Jan 10, 2012

Allam, Bassem Allam B. 2012. Development of strategies to mitigate QPX disease in the hard clam Mercenaria mercenaria. Journal of Shellfish Research 31(1): 207-207. Sokolowski, M.S., B.A. Allam, K.J. Dunton, M.A. Clark, E.B. Kurtz and M.D.Fast. 2012. Immunophysiology...

2011 Publications

by | Jan 10, 2011

Allam, Bassem Rosa, M.E., J.E. Ward, S.E. Shumway, G.H. Wikfors, B.A. Holohan, E. Pales-Espinosa and B. Allam. 2011. The role of particle surface properties on feeding selectivity by Eastern oysters, Crassostrea virginica, and blue mussels, Mytilus edulis. Journal of...

2010 Publications

by | Jan 10, 2010

Allam, Bassem Pales Espinosa, E., M. Perrigault and B. Allam. 2010. Identification and molecular characterization of a mucosal lectin (MeML) from Mytilus edulis and its potential role in particle capture. Comparative Biochemistry and Physiology 156: 495-501....

2009 Publications

by | Jan 10, 2009

Allam, Bassem Perrigault M., A. Tanguy and B. Allam. 2009. Indentification and quantification of differentially expressed genes in the hard clam, Mercenaria mercenaria, in response to quahog parasite unknown (QPX). BMC Genomics 10: 377. doi:10.1186/1471-2164-10-377...

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