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Publications

Peer-reviewed publications by SoMAS Faculty

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Dasgupta, S., & McElroy, A. E. (2017). Cytotoxicity and CYP1A inhibition in rainbow trout liver (RTL-W1) cell lines exposed to dispersant Corexit 9500 and its major surfactant components. Toxicology in Vitro, 44, 377-381.

Lynch, H. J., Foley, C. M., Lynch, M. A., & Thorne, L. H. (2017). Response to Van Norman. BioScience, bix109.

Low lipid and urea effects and inter-tissue comparisons of stable isotope signatures in three nearshore elasmobranchs Oliver N. Shipley*, Karen J. Murchie, Michael G. Frisk, Edward J. Brooks, Owen R. O’Shea, Michael Power

Kim, H. M., & Kim, B. M. (2017). Relative Contributions of Atmospheric Energy Transport and Sea Ice Loss to the Recent Warm Arctic Winter. Journal of Climate, 30(18), 7441-7450.

Tamborski, J. J., Cochran, J. K., & Bokuniewicz, H. J. (2017). Submarine groundwater discharge driven nitrogen fluxes to Long Island Sound, NY: Terrestrial vs. marine sources. Geochimica et Cosmochimica Acta.

Zhou, X., & Khairoutdinov, M. F. (2017). Changes in Temperature and Precipitation Extremes in Super-parameterized CAM in Response to Warmer SSTs. Journal of Climate, (2017).

Peterson, W.T., 1986: “The effects of seasonal variations in stratification on plankton dynamics in Long Island Sound”, in Bowman, M.J., C.M. Yentsch and W.T. Peterson, 1986. “Tidal Mixing and Plankton Dynamics”, Lecture Notes on Coastal and Estuarine Studies #17, Springer Verlag, Berlin, pp. 502. ISBN 0-387-96346-4.

North, K. W., Oue, M., Kollias, P., Giangrande, S. E., Collis, S. M., & Potvin, C. K. (2017). Vertical air motion retrievals in deep convective clouds using the ARM scanning radar network in Oklahoma during MC3E. Atmospheric Measurement Techniques, 10(8), 2785.

Thomas, A. C., Pershing, A. J., Friedland, K. D., Nye, J. A., Mills, K. E., Alexander, M. A., … & Henderson, M. E. (2017). Seasonal trends and phenology shifts in sea surface temperature on the North American northeastern continental shelf. Elem Sci Anth, 5.

Waugh, S., & Aller, R. C. (2017). N 2 production and fixation in deep-tier burrows of Squilla empusa in muddy sediments of Great Peconic Bay. Journal of Sea Research.

Naeger, A. R., Colle, B. A., & Molthan, A. (2017). Evaluation of Cloud Microphysical Schemes for a Warm Frontal Snowband During the GPM Cold Season Precipitation Experiment (GCPEx). Monthly Weather Review, (2017).

Pikitch, E. K., Boersma, P. D., Boyd, I. L., Conover, D. O., Cury, P., Essington, T. E., … & Plaganyi, E. (2017). The strong connection between forage fish and their predators: A response to Hilborn et al.(2017). Fisheries Research.

Young, C. S., & Gobler, C. J. (2017). The organizing effects of elevated CO2 on competition among estuarine primary producers. Scientific Reports, 7.

Wehrmann, L.M., Riedinger, N., Brunner, B., Kamyshny Jr., A., Hubert, C.R.J., Herbert, L.C., Brüchert, V., Jørgensen, B.B., Ferdelman, T.G., Formolo M.J., 2017. Iron-controlled oxidative sulfur cycling recorded in the distribution and isotopic composition of sulfur species in glacially influenced fjord sediments of west Svalbard. Chemical Geology 466, 678-695.

Bond, M. E., Valentin-Albanese, J., Babcock, E. A., Abercrombie, D., Lamb, N. F., Miranda, A., Pikitch, E.K. & Chapman, D. D. (2017). Abundance and size structure of a reef shark population within a marine reserve has remained stable for more than a decade. Marine Ecology Progress Series, 576, 1-10.

Narenpitak, P., Bretherton, C. S., & Khairoutdinov, M. F. (2017). Cloud and circulation feedbacks in a near‐global aquaplanet cloud‐resolving model. Journal of Advances in Modeling Earth Systems.

Sollich, M; Yoshinaga, M.Y.; Häusler, S; Price, R.E.; Hinrichs, K-U; Bühring, S.I. (2017). Heat stress dictates microbial lipid composition along a thermal gradient in marine sediments. Frontiers in Microbiology.

J. Yu, R. E. Wilson and C. N. Flagg 2017 A Hydraulic Model for Multiple-Bay-Inlet Systems onBarrier Islands. Estuaries and Coasts DOI 10.1007/s12237-017-0294-2

Taylor GT, Suter EA, Li ZQ, Chow S, Stinton D, Zaliznyak T and Beaupré SR (2017) Single-Cell Growth Rates in Photoautotrophic Populations Measured by Stable Isotope Probing and Resonance Raman Microspectrometry. Front. Microbiol. 8:1449. doi: 10.3389/fmicb.2017.01449

Li, Y., & Zhang, M. (2017). The Role of Shallow Convection over the Tibetan Plateau. Journal of Climate, 30(15), 5791-5803.

Hattenrath-Lehmann, T. K., & Gobler, C. J. (2017). Identification of unique microbiomes associated with harmful algal blooms caused by Alexandrium fundyense and Dinophysis acuminata. Harmful Algae, 68, 17-30.

Bond, M. E., Valentin-Albanese, J., Babcock, E. A., Abercrombie, D., Lamb, N. F., Miranda, A., Pikitch, E.K. & Chapman, D. D. (2017). Abundance and size structure of a reef shark population within a marine reserve has remained stable for more than a decade. Marine Ecology Progress Series, 576, 1-10.

Kim, H. M. (2017). The impact of the mean moisture bias on the key physics of MJO propagation in the ECMWF reforecast. Journal of Geophysical Research: Atmospheres, 122(15), 7772-7784.

Zhang, Z., & Colle, B. A. (2017). Changes in Extratropical Cyclone Precipitation and Associated Processes During the 21st Century over Eastern North America and the Western Atlantic Using a Cyclone-Relative Approach. Journal of Climate, (2017).

Collier, J. L., Geraci-Yee, S., Lilje, O., & Gleason, F. H. (2017). Possible impacts of zoosporic parasites in diseases of commercially important marine mollusc species: part II. Labyrinthulomycota. Botanica Marina, 60(4), 409-417.

Gleason, F. H., Lilje, O., Dang, C., Geraci-Yee, S., & Collier, J. L. (2017). Possible impacts of zoosporic parasites in diseases of commercially important marine mollusc species: part I. Perkinsozoa. Botanica Marina, 60(4), 401-408.

Dheilly NM, Bolnick D, Bordenstein S, Brindley PJ, Figueres C, Holmes EC, Martinez Martinez J, Phillips AJ, Poulin R, Rosario K (2017). Parasite Microbiome Project: Systematic investigation of microbiome dynamics within and across parasite-host interactions mSystems 2(4)

McDowall, P., & Lynch, H. J. (2017). The importance of topographically corrected null models for analyzing ecological point processes. Ecology.

Madigan, D. J., Baumann, Z., Snodgrass, O. E., Dewar, H., Berman-Kowalewski, M., Weng, K. C., … & Fisher, N. S. (2017). Assessing Fukushima-derived radiocesium in migratory Pacific predators. Environmental Science & Technology, 51(16), 8962-8971.

Zhou, X., Heus, T., & Kollias, P. (2017). Influences of Drizzle on Stratocumulus Cloudiness and Organization. Journal of Geophysical Research: Atmospheres.

Monastero, R. N., Karimi, R., Nyland, J. F., Harrington, J., Levine, K., & Meliker, J. R. (2017). Mercury exposure, serum antinuclear antibodies, and serum cytokine levels in the Long Island Study of Seafood Consumption: A cross-sectional study in NY, USA. Environmental Research, 156, 334-340.

Parishani, H., Pritchard, M. S., Bretherton, C. S., Wyant, M. C., & Khairoutdinov, M. (2017). Toward low cloud‐permitting cloud superparameterization with explicit boundary layer turbulence. Journal of Advances in Modeling Earth Systems.

Henderson, M. E., Mills, K. E., Thomas, A. C., Pershing, A. J., & Nye, J. A. Effects of spring onset and summer duration on fish species distribution and biomass along the Northeast United States continental shelf. Reviews in Fish Biology and Fisheries, 1-14.

Kang, Y., Kudela, R. M., & Gobler, C. J. Quantifying nitrogen assimilation rates of individual phytoplankton species and plankton groups during harmful algal blooms via sorting flow cytometry. Limnology and Oceanography: Methods.

Tridon, F., Battaglia, A., Luke, E., & Kollias, P. (2017). Rain retrieval from dual‐frequency radar Doppler spectra: validation and potential for a midlatitude precipitating case‐study. Quarterly Journal of the Royal Meteorological Society, 143(704), 1364-1380.

Taylor, D. (2017) Palm Up, Palm Down. San Antonio, TX: Wings Press.

Melnychuk, M. C., Dunton, K. J., Jordaan, A., McKown, K. A., & Frisk, M. G. (2017). Informing conservation strategies for the endangered Atlantic sturgeon using acoustic telemetry and multi‐state mark–recapture models. Journal of Applied Ecology, 54(3), 914-925.

Miller, C., Karimi, R., Zhang, Q., Yang, J., & Meliker, J. (2017). Mercury, eicosapentanoic acid and docosahexaenoic acid demonstrate limited effect on plasma paraoxonase-1 activity and blood pressure among avid seafood consumers in the Long Island Study of Seafood Consumption, NY, USA. International journal of hygiene and environmental health, 220(2), 373-377.

Isaacman-VanWertz, G., Massoli, P., O’Brien, R.E., Nowak, J.B., Canagaratna, M.R., Jayne, J.T., Worsnop, D.R., Su, L., Knopf, D.A., Misztal, P.K. and Arata, C., (2017). Using advanced mass spectrometry techniques to fully characterize atmospheric organic carbon: current capabilities and remaining gaps. Faraday Discussions.

Acquistapace, C., Kneifel, S., Löhnert, U., Kollias, P., Maahn, M., & Bauer-Pfundstein, M. (2017). Optimizing observations of drizzle onset with millimeter-wavelength radars. Atmospheric Measurement Techniques, 10(5), 1783-1802.

Chen, J., Pycke, B. F., Brownawell, B. J., Kinney, C. A., Furlong, E. T., Kolpin, D. W., & Halden, R. U. (2017). Occurrence, temporal variation, and estrogenic burden of five parabens in sewage sludge collected across the United States. Science of The Total Environment, 593, 368-374.

Rosen, B. H., Davis, T. W., Gobler, C. J., Kramer, B. J., & Loftin, K. A. (2017). Cyanobacteria of the 2016 Lake Okeechobee and Okeechobee Waterway harmful algal bloom (No. 2017-1054). US Geological Survey.

Yang, K., Davidson, R. A., Nozick, L. K., Blanton, B., & Colle, B. (2017). Scenario-Based Hazard Trees for Depicting Resolution of Hurricane Uncertainty over Time. Natural Hazards Review, 18(3), 04017001.

Brzezinski, M. A., Krause, J. W., Baines, S. B., Collier, J. L., & Ohnemus, D. C. (2017). Patterns and regulation of silicon accumulation in Synechococcus spp. Journal of Phycology.

Farhadzadeh, A. (2017). A study of Lake Erie seiche and low frequency water level fluctuations in the presence of surface ice. Ocean Engineering, 135, 117-136.

Swanson, R. L., Wilson, R., Brownawell, B., & Willig, K. (2017). Environmental consequences of the flooding of the Bay Park Sewage Treatment Plant during Superstorm Sandy. Marine Pollution Bulletin.

Lee, C. S., & Fisher, N. S. (2017). Bioaccumulation of methylmercury in a marine copepod. Environmental toxicology and chemistry, 36(5), 1287-1293.

Mahmoudi, N., Beaupré, S. R., Steen, A. D., & Pearson, A. (2017). Sequential bioavailability of sedimentary organic matter to heterotrophic bacteria. Environmental Microbiology.

Narenpitak, P., Bretherton, C. S., & Khairoutdinov, M. F. (2017). Cloud and circulation feedbacks in a near‐global aquaplanet cloud‐resolving model. Journal of Advances in Modeling Earth Systems.

Krause, J. W., Brzezinski, M. A., Baines, S. B., Collier, J. L., Twining, B. S., & Ohnemus, D. C. (2017). Picoplankton contribution to biogenic silica stocks and production rates in the Sargasso Sea. Global Biogeochemical Cycles.

Jackson, L. J., Furman, B. T., & Peterson, B. J. (2017). Morphological response of Zostera marina reproductive shoots to fertilized porewater. Journal of Experimental Marine Biology and Ecology, 489, 1-6.

Aller, J. Y., Radway, J. C., Kilthau, W. P., Bothe, D. W., Wilson, T. W., Vaillancourt, R. D., … & Knopf, D. A. (2017). Size-resolved characterization of the polysaccharidic and proteinaceous components of sea spray aerosol. Atmospheric Environment, 154, 331-347.

Gobler, C. J., Doherty, O. M., Hattenrath-Lehmann, T. K., Griffith, A. W., Kang, Y., & Litaker, R. W. (2017). Ocean warming since 1982 has expanded the niche of toxic algal blooms in the North Atlantic and North Pacific oceans. Proceedings of the National Academy of Sciences, 201619575. doi:10.1073/pnas.1619575114

Farhadzadeh, A., Hashemi, M. R., & Neill, S. (2017). Characterizing the Great Lakes Hydrokinetic Renewable Energy Resource: Lake Erie Wave, Surge and Seiche Characteristics. Energy.

Suter, E. A., Scranton, M. I., Chow, S., Stinton, D., Medina Faull, L., & Taylor, G. T. (2017). Niskin bottle sample collection aliases microbial community composition and biogeochemical interpretation. Limnology and Oceanography, 62(2), 606-617.

Humphries, G. R. W., Naveen, R., Schwaller, M., Che-Castaldo, C., McDowall, P., Schrimpf, M., & Lynch, H. J. (2017). Mapping Application for Penguin Populations and Projected Dynamics (MAPPPD): data and tools for dynamic management and decision support. Polar Record, 1-7.

Zheng, M., Chang, E.K., Colle, B.A., Luo, Y. and Zhu, Y., 2017. Applying Fuzzy Clustering to a Multimodel Ensemble for US East Coast Winter Storms: Scenario Identification and Forecast Verification. Weather and Forecasting, 32(3), pp.881-903.

Riedinger N, Brunner B, Krastel S, Arnold GL, Wehrmann LM, Formolo MJ, Beck A, Bates SM, Henkel S, Kasten S and Lyons TW (2017) Sulfur cycling in an iron oxide-dominated, dynamic marine depositional system: The Argentine continental margin. Frontiers in Earth Sciences 5:33. doi:10.3389/feart.2017.00033

Farhadzadeh, A., & Gangai, J. (2017). Numerical Modeling of Coastal Storms for Ice-Free and Ice-Covered Lake Erie. Journal of Coastal Research.

Schmidt, S. K., Darcy, J. L., Sommers, P., Gunawan, E., Knelman, J. E., & Yager, K. (2017). Freeze–thaw revival of rotifers and algae in a desiccated, high-elevation (5500 meters) microbial mat, high Andes, Perú. Extremophiles, 1-8.

Roberts, K. J., Colle, B. A., & Korfe, N. (2017). Impact of Simulated Twenty-First-Century Changes in Extratropical Cyclones on Coastal Flooding at the Battery, New York City. Journal of Applied Meteorology and Climatology, 56(2), 415-432.

Painemal, D., Chiu, J. Y. C., Minnis, P., Yost, C., Zhou, X., Cadeddu, M., … & Kollias, P. (2017). Aerosol and cloud microphysics covariability in the northeast Pacific boundary layer estimated with ship‐based and satellite remote sensing observations. Journal of Geophysical Research: Atmospheres, 122(4), 2403-2418.

Cernadas-Martín S, Suter EA, Scranton MI, Astor Y, Taylor GT (2017) Aerobic and anaerobic ammonium oxidizers in the Cariaco Basin: distributions of major taxa and nitrogen species across the redoxcline. Aquat Microb Ecol 79:31-48. https://doi.org/10.3354/ame01817

Foley, C. M., Lynch, M. A., Thorne, L. H., & Lynch, H. J. (2017). Listing Foreign Species under the Endangered Species Act: A Primer for Conservation Biologists. BioScience, bix027.

Chen, J., Pycke, B. F., Brownawell, B. J., Kinney, C. A., Furlong, E. T., Kolpin, D. W., & Halden, R. U. (2017). Occurrence, temporal variation, and estrogenic burden of five parabens in sewage sludge collected across the United States. Science of The Total Environment, 593, 368-374.

Wolfe, C. L., Cessi, P., & Cornuelle, B. D. (2017). An Intrinsic Mode of Interannual Variability in the Indian Ocean. Journal of Physical Oceanography, 47(3), 701-719.

China, S., Alpert, P. A., Zhang, B., Schum, S., Dzepina, K., Wright, K., … & Knopf, D. A. (2017). Ice cloud formation potential by free tropospheric particles from long‐range transport over the Northern Atlantic Ocean. Journal of Geophysical Research: Atmospheres.

Xie, J., & Zhang, M. (2017). Role of internal atmospheric variability in the 2015 extreme winter climate over the North American continent. Geophysical Research Letters.

Ma, C. G., & Chang, E. K. (2017). Impacts of storm track variations on winter time extreme weather events over the continental US. Journal of Climate, (2017).

China, S., Alpert, P. A., Zhang, B., Schum, S., Dzepina, K., Wright, K., … & Knopf, D. A. (2017). Ice cloud formation potential by free tropospheric particles from long‐range transport over the Northern Atlantic Ocean. Journal of Geophysical Research: Atmospheres.

Guo, Y., Shinoda, T., Lin, J., & Chang, E. K. (2017). Variations of Northern Hemisphere Storm Track and Extratropical Cyclone Activity Associated with the Madden-Julian Oscillation. Journal of Climate, (2017).

Wang, W. L., Lee, C., Cochran, J. K., Primeau, F. W., & Armstrong, R. A. (2017). A novel statistical analysis of chloropigment fluxes to constrain particle exchange and organic matter remineralization rate constants in the Mediterranean Sea. Marine Chemistry.

Dvarskas, A. (2017). Dynamically linking economic models to ecological condition for coastal zone management: Application to sustainable tourism planning. Journal of Environmental Management, 188, 163-172.

Yin, H., Zhu, Q., & Aller, R. C. (2017). An irreversible planar optical sensor for multi-dimensional measurements of sedimentary H 2 S. Marine Chemistry.

Herrington, A. R. and K. A. Reed (2017) An explanation for the sensitivity of the Community Atmosphere Model to horizontal resolution on aqua-planets. Journal of Climate. doi: 10.1175/JCLI-D-16-0069.1

Hattenrath-Lehmann, T. K., Ossiboff, R. J., Burnell, C. A., Rauschenberg, C. D., Hynes, K., Burke, R. L., … & Gobler, C. J. (2017). The role of a PSP-producing Alexandrium bloom in an unprecedented diamondback terrapin (Malaclemys terrapin) mortality event in Flanders Bay, New York, USA. Toxicon, 129, 36-43.

Tamborski, J. J., Cochran, J. K., & Bokuniewicz, H. J. (2017). Application of 224 Ra and 222 Rn for evaluating seawater residence times in a tidal subterranean estuary. Marine Chemistry.

Herrington, A. R., & Reed, K. A. (2017). An explanation for the sensitivity of the mean state of the Community Atmosphere Model to horizontal resolution on aqua-planets. Journal of Climate, (2017).

Kasina, M., Bock, S., Würdemann, H., Pudlo, D., Picard, A., Lichtschlag, A., März, C., Wagenknecht, L., Wehrmann, L.M., Vogt, C., Meister, P. (2017) Mineralogical and geochemical analysis of Fe-phases in drill-cores from the Triassic Stuttgart Formation at Ketzin CO2 storage site before CO2 arrival. Environ Earth Sci 76: 161. doi:10.1007/s12665-017-6460-9

Charnawskas, J. C., Alpert, P. A., Lambe, A., Berkemeier, T., O’Brien, R. E., Massoli, P., … Knopf, D.A. & Davidovits, P. (2017). Condensed-phase biogenic-anthropogenic interactions with implications for cold cloud formation. Faraday Discussions.

Martinez, C. M., Duplisea, D. E., Cerrato, R. M., & Frisk, M. G. (2017). Exploration of Trends in Interspecific Abundance-Occupancy Relationships Using Empirically Derived Simulated Communities. PloS one, 12(1), e0170816.

Colle, B. A., Naeger, A. R., & Molthan, A. (2017). Evolution of an Intense Warm Frontal Precipitation Band During the GPM Cold-Season Precipitation Experiment (GCPEx)

Slade, J. H., Shiraiwa, M., Arangio, A., Su, H., Pöschl, U., Wang, J., & Knopf, D. A. (2017). Cloud droplet activation through oxidation of organic aerosol influenced by temperature and particle phase state. Geophysical Research Letters.

Wang, J., Kim, H. M., & Chang, E. K. (2017). Changes in Northern Hemisphere Winter Storm Tracks under the Background of Arctic Amplification. Journal of Climate, (2017).

Rubin, E., Tanguy, A., Pales Espinosa, E., & Allam, B. (2017). Differential Gene Expression in Five Isolates of the Clam Pathogen, Quahog Parasite Unknown (QPX). Journal of Eukaryotic Microbiology.

Zheng, M., Chang, E. K., Colle, B. A., Luo, Y., & Zhu, Y. (2017). Applying Fuzzy Clustering to a Multi-Model Ensemble for US East Coast Winter Storms: Scenario Identification and Forecast Verification. Weather and Forecasting, (2017).

Seimon TA, Seimon A, Yager K, Reider K, Delgado A, Sowell P, Tupayachi A, Konecky B, McAloose D, Halloy S. Long-term monitoring of tropical alpine habitat change, Andean anurans, and chytrid fungus in the Cordillera Vilcanota, Peru: Results from a decade of study. Ecology and Evolution;00:1–14

Scoccimarro, E., Fogli, P. G., Reed, K. A., Gualdi, S., Masina, S., & Navarra, A. (2017). Tropical Cyclone Interaction with the Ocean: The Role of High-Frequency (Subdaily) Coupled Processes. Journal of Climate, 30(1), 145-162.

Barrett, B. S., & Hameed, S. (2017). Seasonal Variability in Precipitation in Central and Southern Chile: Modulation by the South Pacific High. Journal of Climate, 30(1), 55-69.

Kim, O. Y., Kim, H. M., Lee, M. I., & Min, Y. M. (2017). Dynamical–statistical seasonal prediction for western North Pacific typhoons based on APCC multi-models. Climate Dynamics, 48(1-2), 71-88.

Pochron, S., Fiorenza, A., Sperl, C., Ledda, B., Patterson, C., Tucker, C., … & Panico, N. (2017). The response of earthworms (Eisenia fetida) and soil microbes to the crumb rubber material used in artificial turf fields. Chemosphere.

Ghate, V. P., & Kollias, P. (2016). On the controls of daytime precipitation in the Amazonian dry season. Journal of Hydrometeorology, 17(12), 3079-3097.

Rodellas, V., Garcia-Orellana, J., Trezzi, G., Masqué, P., Stieglitz, T.C., Bokuniewicz, H., Cochran, J.K. and Berdalet, E., 2017. Using the radium quartet to quantify submarine groundwater discharge and porewater exchange. Geochimica et Cosmochimica Acta, 196, pp.58-73.

Cao, L., Chen, Y., Dong, S., Hanson, A., Huang, B., Leadbitter, D., Little, D.C., Pikitch, E.K., Qiu, Y., de Mitcheson, Y.S. and Sumaila, U.R., 2017. Opportunity for marine fisheries reform in China. Proceedings of the National Academy of Sciences, 114(3), pp.435-442.

Furman, B. T., Jackson, L. J., & Peterson, B. J. (2017). Edaphic resource foraging by Zostera marina (Linnaeus) patches. Journal of Experimental Marine Biology and Ecology, 486, 214-221.

Chang, E. K. (2017). Projected Significant Increase in the Number of Extreme Extratropical Cyclones in the Southern Hemisphere. Journal of Climate, (2017).

Morse, R. E., Friedland, K. D., Tommasi, D., Stock, C., & Nye, J. (2017). Distinct zooplankton regime shift patterns across ecoregions of the US Northeast continental shelf Large Marine Ecosystem. Journal of Marine Systems, 165, 77-91.

Jin, J., Zeng, Q., Wu, L., Liu, H., & Zhang, M. (2017). Formulation of a new ocean salinity boundary condition and impact on the simulated climate of an oceanic general circulation model. Science China Earth Sciences, 60(3), 491-500.

Moffet, R.C., O’Brien, R.E., Alpert, P.A., Kelly, S.T., Pham, D.Q., Gilles, M.K., Knopf, D.A. and Laskin, A., 2016. Morphology and mixing of black carbon particles collected in central California during the CARES field study. Atmospheric Chemistry and Physics, 16(22), pp.14515-14525.

Weinstein, A., Navarrete, L., Ruppel, C., Weber, T.C., Leonte, M., Kellermann, M.Y., Arrington, E.C., Valentine, D.L., Scranton, M.I. and Kessler, J.D., 2016. Determining the flux of methane into Hudson Canyon at the edge of methane clathrate hydrate stability. Geochemistry, Geophysics, Geosystems, 17(10), pp.3882-3892.

Wu, C., Lin, Z., He, J., Zhang, M., Liu, X., Zhang, R., & Brown, H. (2016). A process‐oriented evaluation of dust emission parameterizations in CESM: Simulation of a typical severe dust storm in East Asia. Journal of Advances in Modeling Earth Systems, 8(3), 1432-1452.

Geller, M. A., Zhou, T., Shindell, D., Ruedy, R., Aleinov, I., Nazarenko, L., … & Field, R. D. (2016). Modeling the QBO–Improvements Resulting from Higher Model Vertical Resolution. Journal of Advances in Modeling Earth Systems.

Tang, T., & Lee, C. (2016). The role of surface layer proteins in the degradation of a photosynthetic prokaryote, the cyanobacterium Synechococcus sp. Marine Chemistry, 186, 33-45.

Harke, M. J., Jankowiak, J. G., Morrell, B. K., & Gobler, C. J. (2016). Transcriptomic responses in the bloom-forming cyanobacterium Microcystis induced during exposure to zooplankton. Applied and Environmental Microbiology, AEM-02832.

Gobler, C. J., Clark, H. R., Griffith, A. W., & Lusty, M. W. (2016). Diurnal Fluctuations in Acidification and Hypoxia Reduce the Growth and Survival of Larval and Juvenile Bay Scallops (Argopecten irradians) and Hard Clams (Mercenaria mercenaria). Frontiers in Marine Science, 3, 282.

Moffet, R.C., O’Brien, R.E., Alpert, P.A., Kelly, S.T., Pham, D.Q., Gilles, M.K., Knopf, D.A. and Laskin, A., 2016. Morphology and mixing of black carbon particles collected in central California during the CARES field study. Atmospheric Chemistry and Physics, 16(22), pp.14515-14525.

Duplisea, D. E., Frisk, M. G., & Trenkel, V. M. (2016). Extinction Debt and Colonizer Credit on a Habitat Perturbed Fishing Bank. PloS one, 11(11), e0166409.

Suter, E. A., Scranton, M. I., Chow, S., Stinton, D., Medina Faull, L., & Taylor, G. T. (2016). Niskin bottle sample collection aliases microbial community composition and biogeochemical interpretation. Limnology and Oceanography.

Acharya, B., Alexandre, J., Baines, S., Benes, P., Bergmann, B., Bernabéu, J., … & de Montigny, M. (2016). Search for magnetic monopoles with the MoEDAL forward trapping detector in 13 TeV proton-proton collisions at the LHC. arXiv preprint arXiv:1611.06817.

Gownaris, N. J., Pikitch, E. K., Aller, J. Y., Kaufman, L. S., Kolding, J., Lwiza, K. M., … & Rountos, K. J. (2016). Fisheries and water level fluctuations in the world’s largest desert lake. Ecohydrology.

Oue, M., P. Kollias, K. W. North, A. Tatarevic, S. Endo, A. M. Vogelmann, and W. I. Gustafson (2016): Estimation of cloud fraction profile in shallow convection using a scanning cloud radar. Geophysical Research Letters, 43,10998–11006, doi: 10.1002/2016GL070776.

Yu, J. (2016). A terrain-following model of wave boundary layers. Ocean Modelling, 108, 20-29.

Zeng, Y., Walker, H., & Zhu, Q. (2016). Reduction of nitrate by NaY zeolite supported Fe, Cu/Fe and Mn/Fe nanoparticles. Journal of Hazardous Materials.

Swanson, R. L., & Bowman, M. J. (2016). Between Stony Brook Harbor Tides: The Natural History of a Long Island Pocket Bay. SUNY Press.

Swanson, R. L., & Bowman, M. J. (2016). Between Stony Brook Harbor Tides: The Natural History of a Long Island Pocket Bay. SUNY Press.

Lu, Q., Ruan, Z., Wang, D. P., Chen, D., & Wu, Q. (2016). Zonal transport from the western boundary and its role in warm water volume changes during ENSO. Journal of Physical Oceanography, (2016).

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Pandey, R., Usui, K., Livingstone, R. A., Fischer, S. A., Pfaendtner, J., Backus, E. H., Knopf, D.A. … & Scheel, J. F. (2016). Ice-nucleating bacteria control the order and dynamics of interfacial water. Science Advances, 2(4), e1501630.

Chen, J., Liu, Y., Zhang, M., & Peng, Y. (2016). New Understanding and Quantification of the Regime Dependence of Aerosol‐Cloud Interaction for Studying Aerosol Indirect Effects. Geophysical Research Letters.

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Trammell, J. H., Jiang, X., Li, L., Kao, A., Zhang, G. J., Chang, E. K., & Yung, Y. (2016). Temporal and Spatial Variability of Precipitation from Observations and Models*. Journal of Climate, 29(7), 2543-2555.

Bluestein, H. B., French, M. M., Snyder, J. C., & Houser, J. B. (2016). Doppler Radar Observations of Anticyclonic Tornadoes in Cyclonically Rotating, Right-Moving Supercells. Monthly Weather Review, 144(4), 1591-1616.

Fisher, S. C., Phillips, P. J., Brownawell, B. J., & Browne, J. P. (2016). Comparison of wastewater-associated contaminants in the bed sediment of Hempstead Bay, New York, before and after Hurricane Sandy. Marine Pollution Bulletin.

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Griffith, A. W., & Gobler, C. J. (2016). Temperature controls the toxicity of the ichthyotoxic dinoflagellate Cochlodinium polykrikoides. MEPS, 545, 63-76.

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Moniruzzaman, M., Gann, E. R., LeCleir, G. R., Kang, Y., Gobler, C. J., & Wilhelm, S. W. (2016). Diversity and dynamics of algal Megaviridae members during a harmful brown tide caused by the pelagophyte, Aureococcus anophagefferens. FEMS Microbiology Ecology, fiw058.

Chapperon, C., Volkenborn, N., Clavier, J., Séité, S., Seabra, R., & Lima, F. P. (2016). Exposure to solar radiation drives organismal vulnerability to climate: Evidence from an intertidal limpet. Journal of Thermal Biology, 57, 92-100.

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Espinosa, E. P., Cerrato, R. M., Wikfors, G. H., & Allam, B. (2016). Modeling food choice in the two suspension-feeding bivalves, Crassostrea virginica and Mytilus edulis. Marine Biology, 163(2), 1-13.

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Hattenrath-Lehmann, T. K., Zhen, Y., Wallace, R. B., Tang, Y. Z., & Gobler, C. J. (2016). Mapping the distribution of cysts from the toxic dinoflagellate, Cochlodinium polykrikoides, in bloom-prone estuaries using a novel fluorescence in situ hybridization assay. Applied and environmental microbiology, 82 (4):1114-1125; 10.1128/AEM.03457-15 FEB 2016

Liu, P., Zhang, Q., Zhang, C., Zhu, Y., Khairoutdinov, M., Kim, H. M., … & Zhang, M. (2016). A Revised Real-Time Multivariate MJO Index. Monthly Weather Review, 144 (2):627-642; 10.1175/MWR-D-15-0237.1 FEB 2016

Li, Y., & Zhang, M. (2016). Cumulus over the Tibetan Plateau in the Summer Based on CloudSat-CALIPSO Data. Journal of Climate, 29 (3):1219-1230; 10.1175/JCLI-D-15-0492.1 FEB 2016.

Chapman, D. D., Feldheim, K.A., Papastamatiou, Y., Hueter, R.H. There and Back Again: A review of residency and return migrations in sharks, with implications for population structure and management. Annual Reviews in Marine Science (Available online in advance of publication).

Ashe, J., Feldheim, K.A., Fields, A., Brooks, E.J., Skomal, G., Gruber, S.H., Chapman, D. D. (In Press). Local population structure and context-dependent isolation by distance in a large coastal shark. Marine Ecology Progress Series.

Kessel, S.T., Chapman, D. D., Franks, B. R., Gedamke, T., Gruber, S. H., Newman, M.J., White, E. R., Perkins, R. G. (In Press). Predictable temperature regulated residency, movement and migration in a large, highly-mobile marine predator. Marine Ecology Progress Series.

Stubler, A. D., A. K. Stevens and B. J. Peterson. 2016. Using community-wide recruitment and succession patterns to assess sediment stress on Jamaican coral reefs. Journal of Experimental Marine Biology and Ecology 474: 29-38.

Wang, W. L., Armstrong, R. A., Cochran, J. K., & Heilbrun, C. (2016). 230 Th and 234 Th as coupled tracers of particle cycling in the ocean: A maximum likelihood approach. Deep Sea Research Part I: Oceanographic Research Papers.

Giner, J. L., Ceballos, H., Tang, Y. Z., & Gobler, C. J. (2016). Sterols and Fatty Acids of the Harmful Dinoflagellate Cochlodinium polykrikoides. Chemistry & Biodiversity, 13(2), 249-252.

Espinosa, E. P., Koller, A., & Allam, B. (2016). Proteomic characterization of mucosal secretions in the eastern oyster, Crassostrea virginica. Journal of proteomics, 132, 63-76. DOI information: 10.1016/j.jprot.2015.11.018

Baines, S.B., X. Chen, S. Vogt, N.S. Fisher, B.S. Twining, and M.R. Landry. In press. Elemental content of single-celled plankton in the Costa Rica Upwelling Dome and mineral limitation of mesozooplankton. Journal of Plankton Research

Baines, S.B., X. Chen, B.S. Twining, N.S. Fisher, and M.R. Landry. In press. Factors affecting Fe and Zn contents of mesozooplankton from the Costa Rica Dome. Journal of Plankton Research

Martinez, C.M., F.J. Rohlf and M.G. Frisk (In Press). Sexual dimorphism in sister species of Leucoraja skate and its relationship to reproductive strategy and life history. Evolution & Development.

Li, H., & Colle, B. A. 2015: Future Changes in Convective Storm Days over the Northeastern United States Using Linear Discriminant Analysis Applied to CMIP5 Predictions. J. Climate. doi: http://dx.doi.org/10.1175/JCLI-D-14-00831.1.

B. Colle, M. Sienkowicz, C. Archer, D. Veron, F. Veron, W. Kimpton, and J.E. Mak, Meteorological Observations for U.S. East Coast Offshore Wind Power: Improving the Mapping and Prediction of Offshore Wind Resources (IMPOWR), BAMS, in press.

Pascal, L., Maire, O., Volkenborn, N., Lecroart, P., Bichon, S., de Montaudouin, X., … & Deflandre, B. (2016). Influence of the mud shrimp Upogebia pusilla (Decapoda: Gebiidea) on solute and porewater exchanges in an intertidal seagrass (Zostera noltei) meadow of Arcachon Bay: An experimental assessment. Journal of Experimental Marine Biology and Ecology, 477, 69-79.

Dunton, K. J., Jordaan, A., Secor, D. H., Martinez, C. M., Kehler, T., Hattala, K. A., … & Frisk, M. G. (2016). Age and Growth of Atlantic Sturgeon in the New York Bight. North American Journal of Fisheries Management, 36(1), 62-73.

Trammell, J. H., Jiang, X., Li, L., Kao, A., Zhang, G. J., Chang, E. K., & Yung, Y. (2016). Temporal and Spatial Variability of Precipitation from Observation and Model. Journal of Climate, (2016).

Espinosa, E. P., Cerrato, R. M., Wikfors, G. H., & Allam, B. (2016). Modeling food choice in the two suspension-feeding bivalves, Crassostrea virginica and Mytilus edulis. Marine Biology, 163(2), 1-13.

Cuesta, F., Muriel, P., Llambi, L.D., Halloy, S., Aguirre, N., Beck, S., Carilla, J., Menses, R.I., Cuello, S., Grau, A., Gamez, L., Irazabel, J., Jacome, J., Jaramillo, R., Ramirez, L., Samaniego, N., Suarez-Duque, D., Thompson, N., Tupuachi, A., Viñas, P., Yager, K., Becerra, M., Pauli, H., Gosling, W. (2016) Latitudinal and altitudinal patterns of plant community diversity on mountain summits across the tropical Andes. Ecography

Wang, X. H., Wang, D. P., Sun, Z., He, Z., Liu, H., Guan, W., … & Bao, X. (2016). International scientists discuss impact on China’s estuarine and coastal environment by intensive anthropogenic activities–The 2nd workshop on sediment dynamics of muddy coasts and estuaries: Physics, biology and their interactions, Zhoushan, China, 23–26 October, 2015. Estuarine, Coastal and Shelf Science, 168, ii-iii.

Wang, K., Espinosa, E. P., Tanguy, A., & Allam, B. (2016). Alterations of the immune transcriptome in resistant and susceptible hard clams (Mercenaria mercenaria) in response to Quahog Parasite Unknown (QPX) and temperature. Fish & shellfish immunology, 49, 163-176.

Soulet, G., Skinner, L. C., Beaupré, S. R., & Galy, V. (2016). A Note on Reporting of Reservoir 14 C Disequilibria and Age Offsets. Radiocarbon, 1-7.

Stubler, A. D., Stevens, A. K., & Peterson, B. J. (2016). Using community-wide recruitment and succession patterns to assess sediment stress on Jamaican coral reefs. Journal of Experimental Marine Biology and Ecology,474, 29-38.

Martinez, C. M., Rohlf, F. J. and Frisk, M. G. (2016), Sexual dimorphism in sister species of Leucoraja skate and its relationship to reproductive strategy and life history. Evolution & Development. doi: 10.1111/ede.12175

Liu, Q., Collier, J. L., & Allam, B. (2016). Seasonality of QPX disease in the Raritan Bay (NY) wild hard clam (Mercenaria mercenaria) population. Aquaculture Research.

Pochron, S. (2016) Monkeys In The Garden Irven DeVore and the Revolution in the Science of Social Behavior. Smashwords.

Pochron, S. (2016) Monkeys In The Garden Irven DeVore and the Revolution in the Science of Social Behavior. Smashwords.

Yee, A. K., & Padilla, D. K. (2015). Allometric Scaling of the Radula in the Atlantic Slippersnail Crepidula fornicata. Journal of Shellfish Research, 34(3), 903-907.

Bretherton, C. S., & Khairoutdinov, M. F. (2015). Convective self‐aggregation feedbacks in near‐global cloud‐resolving simulations of an aquaplanet. Journal of Advances in Modeling Earth Systems.

Supinie, T. A., Jung, Y., Xue, M., Stensrud, D. J., French, M. M., & Bluestein, H. B. (2015). Impact of VORTEX2 Observations on Analyses and Forecasts of the 5 June 2009 Goshen County, Wyoming, Supercell. Monthly Weather Review, (2015).

Bokuniewicz, H., Cochran, J. K., Garcia-Orellana, J., Rodellas, V., Daniel, J. W., & Heilbrun, C. (2015). Intertidal percolation through beach sands as a source of 224,223 Ra to Long Island Sound, New York, and Connecticut, United States. Journal of Marine Research, 73(5), 123-140.

Baumann, H., Wells, R. J. D., Rooker, J. R., Zhang, S., Baumann, Z., Madigan, D. J., … & Fisher, N. S. (2015). Combining otolith microstructure and trace elemental analyses to infer the arrival of juvenile Pacific bluefin tuna in the California current ecosystem. ICES Journal of Marine Science: Journal du Conseil, 72(7), 2128-2138.

Allam, B., and Raftos, D., Immune responses to infectious diseases in bivalves, Journal of Invertebrate Pathology 131: 121-136, ISSN 0022-2011,http://dx.doi.org/10.1016/j.jip.2015.05.005.

Allam, B., & Espinosa, P. E. (2015, April). The multiple, central, roles of mucosal secretions in marine bivalves. In INTEGRATIVE AND COMPARATIVE BIOLOGY (Vol. 55, pp. E4-E4). JOURNALS DEPT, 2001 EVANS RD, CARY, NC 27513 USA: OXFORD UNIV PRESS INC.

McCann, M. J., & Padilla, D. K. (2015). Effects of a patchy food environment across life history stages. Journal of Experimental Marine Biology and Ecology, 472, 135-141.

Alpert, P. A., & Knopf, D. A. (2015). Analysis of isothermal and cooling rate dependent immersion freezing by a unifying stochastic ice nucleation model. Atmospheric Chemistry and Physics Discussions, 15(9), 13109-13166.

Fritts, D. C., Wang, L., Geller, M. A., Lawrence, D. A., Werne, J., & Balsley, B. B. (2015). Numerical Modeling of Multi-Scale Dynamics at a High Reynolds Number: Instabilities, Turbulence, and an Assessment of Ozmidov and Thorpe Scales. Journal of the Atmospheric Sciences, (2015).

Baines, S. B., Chen, X., Twining, B. S., Fisher, N. S., & Landry, M. R. (2015). Factors affecting Fe and Zn contents of mesozooplankton from the Costa Rica Dome. Journal of Plankton Research, fbv098.

Khairoutdinov, M., & Zhou, X. (2015, April). Changes in sub-daily precipitation extremes in a global climate model with super-parameterization under CO2 warming. In EGU General Assembly Conference Abstracts (Vol. 17, p. 7931).

Gribble, M. O., Karimi, R., Feingold, B. J., Nyland, J. F., O’Hara, T. M., Gladyshev, M. I., & Chen, C. Y. (2015). Mercury, selenium and fish oils in marine food webs and implications for human health. Journal of the Marine Biological Association of the United Kingdom, 1-17.

Zhou, X-H, D-P. Wang, and D. Chen, 2015b. Validating satellite altimeter measurements of internal tides with long-term TAO/TRITON buoy observations at 2oS-156oE. Geophy. Res. Lett., 42, doi:10.1002/2015GL063669.

Erickson, M. J., Charney, J. J., & Colle, B. A. (2015). Development of a Fire Weather Index Using Meteorological Observations within the Northeast United States. Journal of Applied Meteorology and Climatology, (2015).

Wang L; Han J, Zhu Y, Zhou R, Jaye C, Liu H, Li Z-Q, Taylor G, Fischer D, Appenzelle, J, Wong SS. 2015. Probing the dependence of electron transfer on size and coverage in carbon nanotube-quantum dot heterostructures. J Phys Chem 119: 26327–26338

Chao Ye, Weihua Qiao, Xiaobin Yu, Xiaojun Ji, He Huang, J. L. Collier, Liming Liu. 2015. Reconstruction and analysis of the genome-scale metabolic model ofschizochytrium limacinum SR21 for docosahexaenoic acid production. BMC Genomics 16 :799 (11pp). DOI 10.1186/s12864-015-2042-y

Mars Brisbin M, McElroy A, Pales Espinosa E, Allam B. 2015. Antimicrobial activity in the cuticle of the American lobster, Homarus americanus. Fish and Shellfish Immunology. 44: 542-546.

Lin, Yanluan Lin, Ming Zhao and Minghua Zhang, 2015: Tropical cyclone rainfall area controlled by relative sea surface temperature, Nature Communications 6, 6591m doi:10.1038/ncomms7591

Ridley, H.E., Y. Asmerom, J.U.L. Baldini, S.F.M. Breitenbach, V.V. Aquino, K.M. Prufer, Brendan J. Culleton, V. Polyak, F.A. Lechleitner, D.J. Kennett, M. Zhang, N. Marwan, C.G. Macpherson, L.M. Baldini, T. Xiao, J.L. Peterkin, J. Awe, G.H. Haug, 2015: Aerosol forcing of the position of the intertropical convergence zone since AD 1550. Nat. Geosci., 8 (2015)http://dx.doi.org/10.1038/ngeo2353

Zhang, M., 2015. Coupled Ocean-Atmosphere Models: Physical Processes. P144-152, In: Gerald R.North (editor-in-chief), John Pyle and Fuqing Zhang (editors). Encyclopedia of Atmospheric Sciences, 2nd edition, Vol 4, pp. 144–152. ISBN: 9780123822253, 2998pp, Copyright © 2015 Elsevier Ltd.

Walcker, R., E. J. Anthony, C. Cassou, R.C. Aller, A. Gardel, C. Proisy, J.-M. Martinez, and F. Fromard, 2015, Fluctuations in the extent of mangroves driven by multi-decadal changes in North Atlantic waves. J. Biogeogr., 42, 2209-2219.

A. J. Illingworth, H. W. Barker, A. Beljaars, M. Ceccaldi, H. Chepfer, N. Clerbaux, J. Cole, J. Delanoë, C. Domenech, D. P. Donovan, S. Fukuda, M. Hirakata, R. J. Hogan, A. Huenerbein, P. Kollias, T. Kubota, T. Nakajima, T. Y. Nakajima, T. Nishizawa, Y. Ohno, H. Okamoto, R. Oki, K. Sato, M. Satoh, M. W. Shephard, A. Velázquez-Blázquez, U. Wandinger, T. Wehr, and G.-J. van Zadelhoff, (2015), The EarthCARE Satellite: The Next Step Forward in Global Measurements of Clouds, Aerosols, Precipitation, and Radiation. Bull. Amer. Meteor. Soc., 96, 1311–1332. doi: http://dx.doi.org/10.1175/BAMS-D-12-00227.1

Robert Wood, Matthew Wyant, Christopher S. Bretherton, Jasmine Rémillard, Pavlos Kollias, Jennifer Fletcher, Jayson Stemmler, Simone de Szoeke, Sandra Yuter, Matthew Miller, David Mechem, George Tselioudis, J. Christine Chiu, Julian A. L. Mann, Ewan J. O’Connor, Robin J. Hogan, Xiquan Dong, Mark Miller, Virendra Ghate, Anne Jefferson, Qilong Min, Patrick Minnis, Rabindra Palikonda, Bruce Albrecht, Ed Luke, Cecile Hannay, and Yanluan Lin, (2015), Clouds, Aerosols, and Precipitation in the Marine Boundary Layer: An Arm Mobile Facility Deployment.Bull. Amer. Meteor. Soc., 96, 419–440. doi: http://dx.doi.org/10.1175/BAMS-D-13-00180.1

Chandra, A., Zhang, C., Kollias, P., Matrosov, S., and Szyrmer, W, (2015), Automated rain rate estimates using the Ka-band ARM zenith radar (KAZR), Atmos. Meas. Tech., 8, 3685-3699, doi:10.5194/amt-8-3685-2015.

Battaglia, A. and P. Kollias, (2015), Error Analysis of a Conceptual Cloud Doppler Stereoradar with Polarization Diversity for Better Understanding Space Applications. J. Atmos. Oceanic Technol., 32, 1298–1319. doi: http://dx.doi.org/10.1175/JTECH-D-14-00015.1

Maximilian Maahn, Ulrich Löhnert, Pavlos Kollias, Robert C. Jackson, and Greg M. McFarquhar, (2015), Developing and Evaluating Ice Cloud Parameterizations for Forward Modeling of Radar Moments Using in situ Aircraft Observations. J. Atmos. Oceanic Technol., 32, 880–903. doi: 10.1175/JTECH-D-14-00112.1

Gail Skofronick-Jackson, David Hudak, Walter Petersen, Stephen W. Nesbitt, V. Chandrasekar, Stephen Durden, Kirstin J. Gleicher, Gwo-Jong Huang, Paul Joe, Pavlos Kollias, Kimberly A. Reed, Mathew R. Schwaller, Ronald Stewart, Simone Tanelli, Ali Tokay, James R. Wang, and Mengistu Wolde, (2015), Global Precipitation Measurement Cold Season Precipitation Experiment (GCPEX): For Measurement’s Sake, Let It Snow. Bull. Amer. Meteor. Soc., 96, 1719–1741. doi: http://dx.doi.org/10.1175/BAMS-D-13-00262.1

Mechem, D. B., Giangrande, S. E., Wittman, C. S., Borque, P., Toto, T. and Kollias, P. (2015), Insights from modeling and observational evaluation of a precipitating continental cumulus event observed during the MC3E field campaign. J. Geophys. Res. Atmos., 120, 1980–1995. doi: 10.1002/2014JD022255.

Gledhill, D.K., M.M. White, J. Salisbury, H. Thomas, I. Mlsna, M. Liebman, B. Mook, J. Grear, A.C. Candelmo, R.C. Chambers, C.J. Gobler, C.W. Hunt, A.L. King, N.N. Price, S.R. Signorini, E. Stancioff, C. Stymiest, R.A. Wahle, J.D. Waller, N.D. Rebuck, Z.A. Wang, T.L. Capson, J.R. Morrison, S.R. Cooley, and S.C. Doney. (2015). Ocean and coastal acidification off New England and Nova Scotia. Oceanography 28(2), 182–197, http://dx.doi.org/10.5670/oceanog.2015.41

Feng, S., Li, Z., Liu, Y., Lin, W., Zhang, M., Toto, T., … & Endo, S. (2015). Development of fine‐resolution analyses and expanded large‐scale forcing properties: 2. Scale awareness and application to single‐column model experiments. Journal of Geophysical Research: Atmospheres.

Michael J McCann and Dianna K Padilla 2015. Effects of a patchy food environment across life history stages. Journal of Experimental Marine Biology and Ecology 472: 135-141.

Alexander Y. Karatayev, Demetrio Boltovskoy, Lyubov Burlakova and Dianna K. Padilla 2015. Parallels and contrasts between Limnoperna fortunei and species of Dreissena. In: Limnoperna fortunei: the ecology, distribution and control of a swiftly spreading invasive fouling mussel, Demetrio Boltovskoy, Editor. Springer.

Alexander Y. Karatayev, Lyubov E. Burlakova, Sergey E. Mastitsky, and Dianna K. Padilla 2015. Predicting the spread of aquatic invaders: insight from 200 years of invasion by zebra mussels. Ecological Applications 25: 430-440.

Alexander Y. Karatayev, Lyubov E. Burlakova and Dianna K. Padilla. 2015. Zebra versus quagga mussels: a review of their spread, population dynamics, and ecosystem impacts. Hydrobiologia 746: 97-112.

Chapman, D. D., Feldheim, K. A., Papastamatiou, Y. P., & Hueter, R. E. (2015). There and Back Again: A Review of Residency and Return Migrations in Sharks, with Implications for Population Structure and Management. Annual review of marine science, 7, 547-570.

Ashe, J. L., Feldheim, K. A., Fields, A. T., Reyier, E. A., Brooks, E. J., O’Connell, M. T., … & Chapman, D. D. (2015). Local population structure and context-dependent isolation by distance in a large coastal shark. Mar Ecol Prog Ser, 520, 203-216.

Watanabe, Y. Y., Goldman, K. J., Caselle, J. E., Chapman, D. D., & Papastamatiou, Y. P. (2015). Comparative analyses of animal-tracking data reveal ecological significance of endothermy in fishes. Proceedings of the National Academy of Sciences, 201500316.

Brooks, E. J., Brooks, A. M., Williams, S., Jordan, L. K., Abercrombie, D., Chapman, D. D., … & Grubbs, R. D. (2015). First description of deep-water elasmobranch assemblages in the Exuma Sound, The Bahamas. Deep Sea Research Part II: Topical Studies in Oceanography, 115, 81-91.

Fields, A. T., Feldheim, K. A., Poulakis, G. R., & Chapman, D. D. (2015). Facultative parthenogenesis in a critically endangered wild vertebrate. Current Biology, 25(11), R446-R447.

Tettelbach, S. T., B. J. Peterson, J. M. Carroll, B. T. Furman, S. W. T. Hughes, J. Havelin, J. R. Europe, D. M. Bonal, A. J. Weinstock and C. F. Smith. 2015. Aspiring to an Alternative Stable State: Rebuilding of Bay Scallop Populations and Fisheries Following Intensive Restoration. Marine Ecology Progress Series 529: 121-136.

Berry, D. L., J. A. Goleski, F. Koch, C. C. Wall, B. J. Peterson, O. R. Anderson and C. J. Gobler. 2015. Shifts in Cyanobacterial Strain Dominance during Onset of Harmful Algal Blooms in Florida Bay, USA. Molecular Ecology 70: 361-371.

Furman, B. T., L. J. Jackson, E. Bricker and B. J. Peterson. 2015. Sexual recruitment in Zostera marina: a patch to landscape-scale investigation. Limnology and Oceanography 60(2): 584-599.

Carroll, J. M., L. L. Jackson and B. J. Peterson. 2015. The effect of increasing habitat complexity on bay scallop survival in the presence of different decapod crustacean predators. Estuaries and Coasts 38: 1569-1579

Stubler, A. D., A. R. Duckworth and B. J. Peterson. 2015. Sedimentation affects sponge abundance, diversity and distribution on Jamaican coral reefs. Marine Pollution Bulletin 96: 261-270.

Stubler, A. D., B. T. Furman and B. J. Peterson. 2015. Sponge erosion under acidification and warming scenarios: differential impacts on living and dead coral. Global Change Biology 21(11): 4006-4020.

Furman, B. T. and B. J. Peterson. 2015. Sexual Recruitment in Zostera marina: Progress toward a Predictive Model. PLoS ONE 10(9): e0138206.

Trathan, P. N., P. García-Borboroglu, D. Boersma, C.-A. Bost, R. J. M. Crawford, G. T. Crossin, R. J. Cuthbert, P. Dann, L. S. Davis, S. De la Puente, U. Ellenberg, H.J. Lynch, T. Mattern, K. Pütz, P. J. Seddon, W. Trivelpiece, B. Wienecke. 2015. Assessing human impacts on marine systems, especially upon penguin species: how much do we care? Conservation Biology 29(1): 31-41.

Casanovas, P.V., R. Naveen, S. Forrest, J. Poncet, and H.J. Lynch. 2015. A comprehensive coastal seabird survey maps out the front lines of ecological change on the Western Antarctic Peninsula. Polar Biology 38: 927-940.

LaRue, M., G. Kooyman, H.J. Lynch, and P. Fretwell. 2015. Emigration in emperor penguins: Implications for interpretation of long-term studies. Ecography 38: 114-120.

Zhou, X., P. Kollias and E. Lewis, (2015), Clouds, Precipitation, and Marine Boundary Layer Structure during the MAGIC Field Campaign. J. Climate, 28, 2420–2442. doi: http://dx.doi.org/10.1175/JCLI-D-14-00320.1

Zermeno, D., C. Zhang, P. Kollias and H. Kalesse, (2015), Shallow Cloud Moistening in MJO and non-MJO Large-Scale Convective Events over the ARM Manus Site. J. Atmos. Sciences, doi: http://dx.doi.org/10.1175/JAS-D-14-0322.1

Lamer, K., P. Kollias, and L. Nuijens (2015), Observations of the variability of shallow trade wind cumulus cloudiness and mass flux. J. Geophys. Res. Atmos., 120, 6161–6178. doi: 10.1002/2014JD022950.

Marcus van Lier-Walqui, Ann Fridlind, Andrew Ackerman, Scott Collis, Jonathan Helmus, Donald MacGorman Kirk North, Pavlos Kollias and Derek Posselt, (2015), Polarimetric radar signatures of deep convection: characteristics of KDP columns observed during MC3E. Monthly Weather Review 2015; e-View doi: 10.1175/MWR-D-15-0100.1

Jiwen Fan, Yi-Chin Liu, Kuan-Man Xu, Kirk North, Scott Collis, Xiquan Dong, Guang J. Zhang, Qian Chen, Kollias Pavlos, and Steven J. Ghan, (2015), Improving Representation of Convective Transport for Scale-Aware Parameterization – Part I: Convection and Cloud Properties Simulated with Spectral-Bin and Bulk Microphysics. Accepted, Journal of Geophysical Research – Atmospheres

Kneifel, S., A.von Lerber, J. Tiira, D. Moisseev, P. Kollias, and J. Leinonen (2015), Observed relations between snowfall microphysics and triple-frequency radar measurements. J. Geophys. Res. Atmos., 120, 6034–6055. doi:10.1002/2015JD023156.

Jensen, M., et al., (2015), The Midlatitude Continental Convective Clouds Experiment (MC3E). Accepted to the Bulletin of the American Meteorological Society

Gownaris NJ, Pikitch EK, Ojwang WO, Michener R, Kaufman L (2015) Predicting Species’ Vulnerability in a Massively Perturbed System: The Fishes of Lake Turkana, Kenya. PLoS ONE 10(5): e0127027. doi:10.1371/journal.pone.0127027

Lin, W., Liu, Y., Vogelmann, A. M., Fridlind, A., Endo, S., Song, H., … & Zhang, M. (2015). RACORO Continental Boundary Layer Cloud Investigations. Part III: Separation of Parameterization Biases in Single‐Column Model CAM5 Simulations of Shallow Cumulus. Journal of Geophysical Research: Atmospheres.

Price, R. E., LaRowe, D. E., Italiano, F., Savov, I., Pichler, T., & Amend, J. P. (2015). Subsurface hydrothermal processes and the bioenergetics of chemolithoautotrophy at the shallow-sea vents off Panarea Island (Italy). Chemical Geology, 407, 21-45.

Engel, B.E; Hallock, P; Price, R.E.; and Pichler, T. (2015). Shell dissolution in larger benthic foraminifers exposed to pH and temperature extremes: Results from an in situ experiment. Journal of Foraminiferal Research. 45 (2).

Dasgupta, S., Huang, I.J., and McElroy A. E. 2015. Hypoxia enhances the toxicity of Corexit EC9500A and CEWAFs prepared with Louisiana Sweet Crude Oil (MD-242) to sheepshead minnow (Cyprinodon variegatus) larvae. PLoS One. DOI:10.1371/journal.pone.0128939.

Romany, J.S., McElroy A.E., and Fast, M. 2015. Measures of immune system status in young-of-the-year winter flounder (Pseudopleuronectes americanus) from Long Island coastal bays. J. Fish. Biol. 86:148-161.

K. Park*, L. K. Emmons, Z. Wang and J. E. Mak, Joint Application of Concentration and δ18O to Investigate the Global Atmospheric CO Budget, Atmosphere, 6, 547-578; doi:10.3390/atmos6050547, 2015.

K. Park*, Z. Wang, L. K. Emmons, J. E. Mak, Variation of atmospheric CO, δ13C and δ18O at high northern latitude during 2004-2009: observations and model simulations, J. Geophys.Res.-Atmos., 120, 11,024–11,036, doi:10.1002/2015JD023191, 2015.

P.K. Misztal et al., inc. J.E. Mak, Atmospheric benzenoid emissions from plants rival those from fossil fuel, Nature Sci. Rep., 5, 12064, 2015.

L. Su*, E. G. Patton, J. Vilà-Guerau de Arellano, A. B. Guenther, L. Kaser, B. Yuan, F. Xiong, P. B. Shepson, L. Zhang, D. O. Miller, W. H. Brune, K. Baumann, E. Edgerton, A. Weinheimer, and J. E. Mak, Understanding isoprene photo-oxidation using observations and modeling over a subtropical forest in the Southeast US, Atmos. Chem. Phys. Discuss., 15, 31621-31663, doi:10.5194/acpd-15-31621-2015, 2015.

Thalman, R., Baeza-Romero, M. T., Ball, S. M., Borrás, E., Daniels, M. J. S., Goodall, I. C. A., Henry, S. B., Karl, T., Keutsch, F. N., Kim, S., Mak, J., Monks, P. S., Muñoz, A., Orlando, J., Peppe, S., Rickard, A. R., Ródenas, M., Sánchez, P., Seco, R., Su, L., Tyndall, G., Vázquez, M., Vera, T., Waxman, E., and Volkamer, R.: Instrument intercomparison of glyoxal, methyl glyoxal and NO2 under simulated atmospheric conditions, Atmos. Meas. Tech., 8, 1835-1862, doi:10.5194/amt-8-1835-2015, 2015.

Yoo, C., S. Park, D. Kim, J. H. Yoon, and H. M. Kim, 2015: Boreal winter MJO teleconnection in the Community Atmosphere Model version 5 with the Unified Convection parameterization, J. Climate, 28, 8135-8150

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Keeling PJ, Burki F, Gobler CJ, and 65 others. (2014). The functional diversity of eukaryotic life in the oceans through transcriptome sequencing. PLOS Biology, 12 : e1001889, DOI: 10.1371/journal.pbio.1001889

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Wallace, R. B., & Gobler, C. J. (2014). Factors Controlling Blooms of Microalgae and Macroalgae (Ulva rigida) in a Eutrophic, Urban Estuary: Jamaica Bay, NY, USA. Estuaries and Coasts, 1-15.

Gobler CJ, Talmage SC. (2014). Physiological response and resilience of early life stage Eastern oysters (Crassostrea virginica) to past, present, and future ocean acidification. Conservation Physiology, 2, 1-15

Dheilly NM (2014). Holobiont-holobiont interactions: redefining host-parasite interactions. Plos Path. 10(7): e1004093

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Wolfe, C. L., Cessi, P., 2014: Salt Feedback in the Adiabatic Overturning Circulation. J. Phys. Oceanogr., 44, 1175-1194. doi: http://dx.doi.org/10.1175/JPO-D-13-0154.1

Wolfe, C. L., 2014: Approximations to the ocean’s residual circulation in arbitrary tracer coordinates. Ocean Modelling, 75, 20–35, doi: 10.1016/j.ocemod.2013.12.004.

Knopf, D. A., Alpert, P. A., Wang, B., O’Brien, R. E., Kelly, S. T., Laskin, A., GIlles, M.K. & Moffet, R. C. (2014). Microspectroscopic imaging and characterization of individually identified ice nucleating particles from a case field study. Journal of Geophysical Research: Atmospheres, 119(17), 10-365.

JH Slade, DA Knopf (2014). Multiphase OH oxidation kinetics of organic aerosol: The role of particle phase state and relative humidity. Geophysical Research Letters 41 (14), 5297-5306.

Sanchez-Franks, A., C. N. Flagg, & T. Rossby, (2014). A comparison of transport and position between the Gulf Stream east of Cape Hatteras and the Florida Current, Journal of Marine Research, 72, 291–306.

Rossby, T., Flagg, C. N., Donohue, K., Sanchez-Franks, A., & Lillibridge, J. (2014). On the long-term stability of Gulf Stream transport based on 20 years of direct measurements. Geophysical Research Letters.

Childers, K. H., Flagg, C. N., & Rossby, T. (2014). Direct velocity observations of volume flux between Iceland and the Shetland Islands. Journal of Geophysical Research: Oceans, 119(9), 5934-5944.

D. Nalluri, Z. Baumann, D.L. Abercrombie, D.D. Chapman, C.R. Hammerschmidt, and N.S. Fisher. 2014. Methylmercury in dried shark fins and shark fin soup from American restaurants. Science of the Total Environment 496: 644-648.

Madigan, D.J., Z. Baumann, A.B. Carlisle, D.K. Hoen, B.N. Popp, H. Dewar, O.E. Snodgrass, B.A Block, and N.S. Fisher. 2014. Reconstructing transoceanic migration patterns of Pacific bluefin tuna using a chemical tracer toolbox. Ecology 95: 1674-1683.

Karimi, R., S. Silbernagel, N.S. Fisher, and J.R. Meliker. 2014. Elevated blood Hg at recommended seafood consumption rates in adult seafood consumers. International Journal of Hygiene and Environmental Health 217: 758-764.

Karimi, R., N.S. Fisher, and J.R. Meliker. 2014. Mercury-nutrient signatures in seafood and in the blood of avid seafood consumers. Science of the Total Environment 496: 636-643.

Dutton, J., and N.S. Fisher. 2014. Modeling metal bioaccumulation and tissue distribution in killifish (Fundulus heteroclitus) in three contaminated estuaries. Environmental Toxicology and Chemistry 33: 89-101.

Brown, E. E., Baumann, H., & Conover, D. O. 2014. Temperature and photoperiod effects on sex determination in a fish. Journal of Experimental Marine Biology and Ecology, 461: 39-43.

Maloney, E. D., Colle, B. C. and Coauthors, 2014: North American Climate in CMIP5 Experiments: Part III: Assessment of Twenty-First-Century Projections*. J. Climate, 27, 2230-2270. doi: http://dx.doi.org/10.1175/JCLI-D-13-00273.1.

Hodrefe, C, P. Doraiswamy, B. Colle, K. Demerjian, W. Hao, M. Erickson, M. Souders, and J-Y Ku, 2014: Meteorology, Emissions, and Grid Resolution: Effects on Discrete and Probabilistic Model Performance. In: D. Steyn, P. Builtjes, R. Timmermans (eds.): Air Pollution and Modeling and Its Application XXII, NARA Science for Peace and Security Series C: Environmental Security, 493-497. Springer Netherlands.

Wuebbles, D., Meehl, G., Hayhoe, K., Karl, T. R., Kunkel, K., Santer, B., Colle, B. C., … & Sun, L. 2014: CMIP5 climate model analyses: Climate extremes in the United States. Bulletin of the American Meteorological Society, 95(4), 571-583.

Colle, B. A., Stark, D. and Yuter, S.E. 2014: Surface Microphysical Observations within East Coast Winter Storms on Long Island, New York. Mon. Wea. Rev., 142, 3126-3146. doi: http://dx.doi.org/10.1175/MWR-D-14-00035.1

Wilson, R. E., Bratton, S. D., Wang, J., & Colle, B. A. 2014: Evidence for Directional Wind Response in Controlling Inter-annual Variations in Duration and Areal Extent of Summertime Hypoxia in Western Long Island Sound. Estuaries and Coasts, 1-9.

Picca, J.C., D.M. Schultz, B. A. Colle, S. Ganetis, D.R. Novak, and M. Sienkiewicz, 2014: The value of dual-polarization radar in diagnosing the complex microphysical evolution of an intense snowband. Bull. Meteor. Soc., 95, 1825-1834.

Li, H., and B.A. Colle, 2014: Multidecadal changes in the frequency and ambient conditions of warm season convective storms over the northeastern U.S. J. Climate, 27, 7285-7300.

Colle, B.A. 2014: Cold Air Damming. In: Gerald R. North (editor-in-chief), John Pyle and Fuqing Zhang (editors). Encyclopedia of Atmospheric Sciences, 2nd edition, Vol 4, pp. 62–68.

Rountos, K.J., Tang, Y.Z., Cerrato, R.M., Gobler, C.J., Pikitch, E.K. (2014). Toxicity of the harmful dinoflagellate Cochlodinium polykrikoides to early life stages of three estuarine forage fish. Mar Ecol Prog Ser 505: 81-94

McCauley, M. M., Cerrato, R. M., Sclafani, M., & Frisk, M. G. (2014). Diel Behavior in White Perch Revealed using Acoustic Telemetry. Transactions of the American Fisheries Society, 143(5): 1330-1340.

McNamara, M.E., D.J. Lonsdale, and R.M. Cerrato (2014). Role of eutrophication in structuring planktonic communities in the presence of the ctenophore Mnemiopsis leidyi. Mar. Ecol. Prog. Ser. 510: 151-165

Collier, J.L., S.P. Fitzgerald, L.A. Hice, M.G. Frisk, and A.E. McElroy (2014) A New PCR-Based Method Shows That Blue Crabs (Callinectes sapidus (Rathbun)) Consume Winter Flounder (Pseudopleuronectes americanus (Walbaum)). Plos One 9.

Sagarese, S.R., M.G. Frisk, T.J. Miller, K.A. Sosebee, J.A. Musick, and P.J. Rago (2014) Influence of environmental, spatial, and ontogenetic variables on habitat selection and management of spiny dogfish in the Northeast (US) shelf large marine ecosystem. Canadian Journal of Fisheries and Aquatic Sciences 71(4), 567-580.

Skyler R. Sagarese, Michael G. Frisk, Robert M. Cerrato, Kathy A. Sosebee, John A. Musick, and Paul J. Rago (2014). Application of generalized additive models to examine ontogenetic and seasonal distributions of spiny dogfish (Squalus acanthias) in the Northeast (US) shelf large marine ecosystem. Can J. Fish. Aq. Sci. 71: 847-877.

Pycke, B. F., Roll, I. B., Brownawell, B. J., Kinney, C. A., Furlong, E. T., Kolpin, D. W., & Halden, R. U. (2014). Transformation Products and Human Metabolites of Triclocarban and Triclosan in Sewage Sludge Across the United States. Environmental science & technology, 48(14), 7881-7890.

Lara-Martín, P. A., González-Mazo, E., Petrovic, M., Barceló, D., & Brownawell, B. J. (2014). Occurrence, distribution and partitioning of nonionic surfactants and pharmaceuticals in the urbanized Long Island Sound Estuary (NY). Marine pollution bulletin.

Traverso-Soto, J. M., Brownawell, B. J., González-Mazo, E., & Lara-Martín, P. A. (2014). Partitioning of alcohol ethoxylates and polyethylene glycols in the marine environment: Field samplings vs laboratory experiments. Science of the Total Environment, 490, 671-678.

Yuan, W., Geller, M. A. and Love, P. T. (2014), ENSO influence on QBO modulations of the tropical tropopause. Q.J.R. Meteorol. Soc., 140: 1670-1676. doi: 10.1002/qj.2247

Frisk, M.G., Jordaan, A., Miller, T.J. (2014) Moving beyond the current paradigm in marine population connectivity: are adults the missing link? Fish and Fisheries 15, 242-254.

Sheffield, J., et al. (including E.K.M. Chang), 2014: Regional Climate Processes and Projections for North America: CMIP3/CMIP5 differences, attribution and outstanding issues. NOAA Technical Report OAR CPO-2. Available at http://docs.lib.noaa.gov/noaa_documents/OAR/CPO/TR_OAR_CPO/CPO-2.pdf.

Maloney, E.D., S.J. Camargo, E. Chang, et al., 2014: North American climate in CMIP5 experiments: Part III: Assessment of twenty-first-century projections, J. Climate, 27, 2230-2270, doi: 10.1175/JCLI-D-13-00273.1.

Feng, J., Liu, P., Chen, W., & Wang, X. (2014). Contrasting Madden–Julian Oscillation activity during various stages of EP and CP El Niños. Atmospheric Science Letters.

Liu, P. (2014). MJO structure associated with the higher-order CEOF modes. Climate Dynamics, 1-12.

Bluestein, Howard B., J. B. Houser, M. M. French, J. C. Snyder, G. D. Emmitt, I. PopStefanija, C. A. Baldi, and R. T. Bluth, (2014). Observations of the boundary layer near tornadoes and in supercells using a mobile, co-located, pulsed Doppler lidar and radar. J. Atmos. Oceanic Technol., 31, 302-325.

French, Michael M., H. B. Bluestein, I. PopStefanija, C. A. Baldi, and R. T. Bluth, (2014). Mobile, phased-array, Doppler radar observations of tornadoes at X band. Mon. Wea. Rev., 142, 1010-1036.

Skinner, Patrick S., C. C. Weiss, M. M. French, H. B. Bluestein, P. M. Markowski, and Y. P. Richardson, (2014). VORTEX2 observations of a low-level mesocyclone with multiple internal rear-flank downdraft momentum surges in the 18 May 2010 Dumas, Texas supercell. Mon. Wea. Rev., 142, 2935-2960.

Dietrich, D. E., Bowman, M. J., Korotenko, K. A., & Bowman, M. H. E. (2014). Oil Spill Risk Management: Modeling Gulf of Mexico Circulation and Oil Dispersal. John Wiley & Sons.

Garcia-Orellana, J., Cochran, J. K., Bokuniewicz, H., Daniel, J. W. R., Rodellas, V., & Heilbrun, C. (2014). Evaluation of 224Ra as a tracer for submarine groundwater discharge in Long Island Sound (NY). Geochimica et Cosmochimica Acta 114, 314-330.

Koch, F., Burson, A., Tang, Y. Z., Collier, J. L., Fisher, N. S., Sañudo-Wilhelmy, S., & Gobler, C. J. (2014). Alteration of plankton communities and biogeochemical cycles by harmful Cochlodinium polykrikoides (Dinophyceae) blooms. Harmful Algae, 33(0), 41-54. doi: http://dx.doi.org/10.1016/j.hal.2014.01.003

Souders, M. B., Colle, B. A., & Chang, E. K. 2014: The Climatology and Characteristics of Rossby Wave Packets Using a Feature-Based Tracking Technique. Monthly Weather Review, 142(10), 3528-3548.

Souders, M.B., B.A. Colle, and E.K.M. Chang, 2014: A description of an automated approach for feature-based tracking of Rossby wave packets. Mon. Wea. Rev., 142, 3505-3527, doi:10.1175/MWR-D-1300317.1.

Chang, E.K.M., 2014: Impacts of background field removal on CMIP5 projected changes in Pacific winter cyclone activity, J. Geophys. Res. Atmos., 119, 4626-4639, doi:10.1002/2013JD020746.

Xia, X.*, and E.K.M. Chang, 2014: Diabatic damping of zonal index variations, J. Atmos. Sci., 71, 3090-3105, doi:10.1175/JAS-D-13-0292.1.

Doherty, O. M., Riemer, N., & Hameed, S. (2014). Role of the convergence zone over West Africa in controlling Saharan mineral dust load and transport in the boreal summer. Tellus B, 66.

Wallace, R. B., Baumann, H., Grear, J. S., Aller, R. C., & Gobler, C. J. (2014). Coastal ocean acidification: The other eutrophication problem. Estuarine, Coastal and Shelf Science.

del Castillo C, Allam B. (2014). A comparative genomics analysis of the T3SS2α pathogenicity island of Vibrio parahaemolyticus. Journal of Shellfish Research 33(2): 550

Wang K, Pales Espinosa E, Allam B. (2014). Effect of “heat shock” treatments on QPX disease in the hard clam, Mercenaria mercenaria. Journal of Shellfish Research 33(2): 661.

Wang K, Del Castillo C, Pales Espinosa E, Allam B. (2014). Clam focal and systemic immune responses to QPX revealed by RNA-Seq technology. Journal of Shellfish Research 33(2): 661.

Rubin E, Pales Espinosa E, Koller A, Allam B. (2014). Extracellular proteins in quahog parasite unknown (QPX) mucoid secretion. Journal of Shellfish Research 33(2): 648.

Rubin E, Tanguy A, Pales Espinosa E, Allam B. (2014). Differential gene expression in quahog parasite unknown (QPX) in response to clam factors and transcriptomic profiling of five QPX isolates. Journal of Shellfish Research 33(2): 647-648.

Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, et al. (2014). The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. PLoS Biology, 12(6), e1001889.

Rosa M, Ward E, Shumway S, Wikfors G, Pales Espinosa E, Allam B. (2014). Examining seasonal shifts in retention efficiency and mucosal composition in the blue mussel Mytilus edulis. Journal of Shellfish Research 33(2): 647.

Allam B., Corre E, Pales Espinosa E. (2014). Pallial mucus of Crassostrea virginica regulates the expression of putative virulence genes of its pathogen Perkinsus marinus. Journal of Shellfish Research 33(2): 586.

Allam, B., Pales Espinosa, E., Tanguy, A., Jeffroy, F., Le Bris, C., Paillard, C. 2014. Transcriptional changes in manila clam (Ruditapes philippinarum) in response to brown ring disease. Fish and Shellfish immunology. 41, 2-11.

Rubin E, Tanguy A, Perrigault M, Pales Espinosa E, Allam B. (2014). Characterization of the transcriptome and temperature-induced differential gene expression of in quahog parasite unknown QPX, the thraustochytrid parasite of hard clams. BMC Genomics 15: 245.

Pales Espinosa E, Koller T, Allam B. (2014). Shotgun proteomic characterization of the pallial mucus of the oyster Crassostrea virginica. Journal of Shellfish Research 33(2): 640.

Dahl S, Barnes D, Allam B. (2014). QPX disease relationships with environmental parameters monitored over a decade in a Raritan Bay (NY) hard clam fishery. Journal of Shellfish Research 33(2): 599-600.

Pales Espinosa E., Allam B. (2014). Food quality and season affect the expression of the mucosal lectin MeML and food sorting abilities in the blue mussel Mytilus edulis. Journal of Shellfish Research 33(2): 639-640.

Pales Espinosa E., Corre E, Allam B. (2014). Pallial mucus of Crassostrea virginica regulates the expression of putative virulence genes of its pathogen Perkinsus marinus. International Journal for Parasitology 44: 305-317.

Beaupré, S. R. (2014). Chapter 6: The isotopic composition of marine DOC, in Biogeochemistry of Marine Dissolved Organic Carbon, 2nd Edition, edited by D. A. Hansell and C. A. Carlson, pp. 335-368, Academic Press, U.K.

Geers, T.M., E.K. Pikitch, M.G. Frisk (In Press-online February 5, 2014). An Original Model of the Northern Gulf of Mexico using Ecopath with Ecosim and its Implications for the Effects of Fishing on Ecosystem Structure and Maturity. Deep Sea Research Part II: Topical Studies in Oceanography.

Newman, E. T. Biography of a Hacienda: Work and Revolution in Rural Mexico. 2014 University of Arizona Press.

Newman, E. T. Biography of a Hacienda: Work and Revolution in Rural Mexico. 2014 University of Arizona Press.

Dietrich, D. E., Bowman, M. J., Korotenko, K. A., & Bowman, M. H. E. The 2010 Deep Water Horizon and 2002 Supertanker Prestige Accidents. Oil Spill Risk Management: Modeling Gulf of Mexico Circulation and Oil Dispersal, 1-8.

Dietrich, D. E., Bowman, M. J., Korotenko, K. A., & Bowman, M. H. E. The 2010 Deep Water Horizon and 2002 Supertanker Prestige Accidents. Oil Spill Risk Management: Modeling Gulf of Mexico Circulation and Oil Dispersal, 1-8.

Berg, L. K., J. D. Fast, J. C. Barnard, S. P. Burton, B. Cairns, D. Chand, J. M. Comstock, S. Dunagan, R. A. Ferrare, C. J. Flynn, J. W. Hair., C. A. Hostetler., J. Hubbe., R. Johnson, E. I. Kassianov, C. D. Kluzek, P. Kollias, K. Lamer, F. Mei, M. A. Miller, J. Michalsky, I. Ortega, R R. Rogers., P. B. Russell, J. Redemann, A. J. Sedlacek III, M. Segal-Rosenheimer, B. Schmid, J. E. Shilling, Y. Shinozuka, S. R. Springston, J. Tomlinson, M. Tyrrell, J. M. Wilson, R. Volkamer, A. Zelenyuk, and C. M. Berkowitz, (2013), The Two-Column Aerosol Project: Phase I Overview and Impact of Elevated Aerosol Layers on Aerosol Optical Depth, Accepted to the Journal of Geophysical Research

Taylor, D. (2013). The Log from the Sea of Cortez: A Poem Series. San Antonio, TX: Wings Press.

Taylor, D. (2013). The Log from the Sea of Cortez: A Poem Series. San Antonio, TX: Wings Press.

Cao, Z., Zhu, Q., Aller, R. C., Aller, J. Y., & Waugh, S. (2013). Seasonal, 2-D sedimentary extracellular enzyme activities and controlling processes in Great Peconic Bay, Long Island. Journal of Marine Research, 71(6), 399-423.

Archer, C. L., Colle, B. C., Monache, L., Dvorak, M. J., Lundquist, J., Bailey, B. H., … & Zack, J. 2013: Meteorology for coastal/offshore wind energy in the United States: recommendations and research needs for the next 10 years. Bulletin of the American Meteorological Society.

Okubo, A., & Levin, S. A. (2013). Diffusion and ecological problems: modern perspectives (Vol. 14). Springer Science & Business Media.

Okubo, A., & Levin, S. A. (2013). Diffusion and ecological problems: modern perspectives (Vol. 14). Springer Science & Business Media.

Aerts, J., Botzen, W., Bowman, M., Dircke, P. and Ward, P., 2013. Climate adaptation and flood risk in coastal cities. Routledge.

Aerts, J., Botzen, W., Bowman, M., Dircke, P. and Ward, P., 2013. Climate adaptation and flood risk in coastal cities. Routledge.

D. Hill, M.J. Bowman, and J.S. Khinda (eds.). 2012. Storm Surge Barriers to Protect New York City: Against the Deluge, Amer. Soc. Civil Eng., pp. 259.

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Safina, C. 2011. A Sea in Flames. Random House, Inc. New York.

Safina, C. 2011. A Sea in Flames. Random House, Inc. New York.

Safina, C. 2011. The View From Lazy Point. Henry Holt Co. New York.

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2016 Publications

by | Jan 1, 2016

Allam, Bassem Liu, Q., Collier, J. L., & Allam, B. (2016). Seasonality of QPX disease in the Raritan Bay (NY) wild hard clam (Mercenaria mercenaria) population. Aquaculture Research. Aller, Josie Aller, Robert Beaupré, Steven Soulet, G., Skinner, L. C., Beaupré,...

2015 Publications

by | Jan 5, 2015

Allam, Bassem Wang, K., Espinosa, E. P., Tanguy, A., & Allam, B. (2015). Alterations of the immune transcriptome in resistant and susceptible hard clams (Mercenaria mercenaria) in response to Quahog Parasite Unknown (QPX) and temperature. Fish & Shellfish...

2014 Publications

by | Jan 10, 2014

Allam, Bassem Rubin, E., Espinosa, E. P., Koller, A., & Allam, B. (2014). Characterization of the secretome of the clam parasite, QPX. International Journal for Parasitology. Raghuvanshi, D. S., Kumari, K., Allam, B. K., & Singh, K. N. (2014). A convenient and...

2013 Publications

by | Jan 10, 2013

Allam, Bassem Allam B. , Carden WE, Ward JE, Ralph G, Winnicki S, Pales Espinosa E. (2013). Early host-pathogen interactions in marine bivalves: Evidence that the alveolate parasite Perkinsus marinus infects through the oyster mantle during rejection of pseudofeces....

2012 Publications

by | Jan 10, 2012

Allam, Bassem Allam B. 2012. Development of strategies to mitigate QPX disease in the hard clam Mercenaria mercenaria. Journal of Shellfish Research 31(1): 207-207. Sokolowski, M.S., B.A. Allam, K.J. Dunton, M.A. Clark, E.B. Kurtz and M.D.Fast. 2012. Immunophysiology...

2011 Publications

by | Jan 10, 2011

Allam, Bassem Rosa, M.E., J.E. Ward, S.E. Shumway, G.H. Wikfors, B.A. Holohan, E. Pales-Espinosa and B. Allam. 2011. The role of particle surface properties on feeding selectivity by Eastern oysters, Crassostrea virginica, and blue mussels, Mytilus edulis. Journal of...

2010 Publications

by | Jan 10, 2010

Allam, Bassem Pales Espinosa, E., M. Perrigault and B. Allam. 2010. Identification and molecular characterization of a mucosal lectin (MeML) from Mytilus edulis and its potential role in particle capture. Comparative Biochemistry and Physiology 156: 495-501....

2009 Publications

by | Jan 10, 2009

Allam, Bassem Perrigault M., A. Tanguy and B. Allam. 2009. Indentification and quantification of differentially expressed genes in the hard clam, Mercenaria mercenaria, in response to quahog parasite unknown (QPX). BMC Genomics 10: 377. doi:10.1186/1471-2164-10-377...

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